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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9040</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9041</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -402,19 +402,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co">#&gt; rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co">#&gt; 1 R S R S R S</span></span>
<span><span class="co">#&gt; 2 R I R R I R</span></span>
<span><span class="co">#&gt; 3 R I R R R R</span></span>
<span><span class="co">#&gt; 4 S I S R I R</span></span>
<span><span class="co">#&gt; 5 I S R I R S</span></span>
<span><span class="co">#&gt; 6 R S R R S R</span></span>
<span><span class="co">#&gt; 1 S R S I R R</span></span>
<span><span class="co">#&gt; 2 S R I I S S</span></span>
<span><span class="co">#&gt; 3 R S R S R I</span></span>
<span><span class="co">#&gt; 4 S I I S S R</span></span>
<span><span class="co">#&gt; 5 S I I I R R</span></span>
<span><span class="co">#&gt; 6 I S S R I S</span></span>
<span><span class="co">#&gt; kanamycin</span></span>
<span><span class="co">#&gt; 1 R</span></span>
<span><span class="co">#&gt; 2 R</span></span>
<span><span class="co">#&gt; 3 R</span></span>
<span><span class="co">#&gt; 4 S</span></span>
<span><span class="co">#&gt; 5 S</span></span>
<span><span class="co">#&gt; 6 I</span></span></code></pre></div>
<span><span class="co">#&gt; 1 I</span></span>
<span><span class="co">#&gt; 2 I</span></span>
<span><span class="co">#&gt; 3 I</span></span>
<span><span class="co">#&gt; 4 I</span></span>
<span><span class="co">#&gt; 5 I</span></span>
<span><span class="co">#&gt; 6 R</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -455,40 +455,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3156</td>
<td align="right">63.12%</td>
<td align="right">3156</td>
<td align="right">63.12%</td>
<td align="right">3194</td>
<td align="right">63.88%</td>
<td align="right">3194</td>
<td align="right">63.88%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">983</td>
<td align="right">19.66%</td>
<td align="right">4139</td>
<td align="right">82.78%</td>
<td align="right">1012</td>
<td align="right">20.24%</td>
<td align="right">4206</td>
<td align="right">84.12%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">478</td>
<td align="right">9.56%</td>
<td align="right">4617</td>
<td align="right">92.34%</td>
<td align="right">448</td>
<td align="right">8.96%</td>
<td align="right">4654</td>
<td align="right">93.08%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">259</td>
<td align="right">5.18%</td>
<td align="right">4876</td>
<td align="right">97.52%</td>
<td align="right">247</td>
<td align="right">4.94%</td>
<td align="right">4901</td>
<td align="right">98.02%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">124</td>
<td align="right">2.48%</td>
<td align="right">99</td>
<td align="right">1.98%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>