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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<p>This data set contains interpretation rules for MIC values and disk
diffusion diameters. Included guidelines are CLSI (2011-2023) and EUCAST
(2011-2023).</p>
<p>Clinical breakpoints in this package were validated through and
imported from <a href="https://whonet.org" class="external-link">WHONET</a>, a free desktop
Windows application developed and supported by the WHO Collaborating
Centre for Surveillance of Antimicrobial Resistance. More can be read on
<a href="https://whonet.org" class="external-link">their website</a>. The developers of WHONET
and this <code>AMR</code> package have been in contact about sharing
their work. We highly appreciate their development on the WHONET
software.</p>
<p>The CEO of CLSI and the chairman of EUCAST have endorsed the work and
public use of this <code>AMR</code> package (and consequently the use of
their breakpoints) in June 2023, when future development of distributing
clinical breakpoints was discussed in a meeting between CLSI, EUCAST,
the WHO, and developers of WHONET and the <code>AMR</code> package.</p>
<p><strong>NOTE:</strong> this <code>AMR</code> package (and the WHONET
software as well) contains internal methods to apply the guidelines,
which is rather complex. For example, some breakpoints must be applied
on certain species groups (which are in case of this package available
through the <code>microorganisms.groups</code> data set). It is
important that this is considered when using the breakpoints for own
use.</p>
</div>
<div class="section level3">
<h3 id="example-content-3">Example content<a class="anchor" aria-label="anchor" href="#example-content-3"></a>