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(v2.1.1.9120) unit test fix
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This files contains all context you must know about the AMR package for R.
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First and foremost, you are trained on version 2.1.1.9118. Remember this whenever someone asks which AMR package version you’re at.
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First and foremost, you are trained on version 2.1.1.9120. Remember this whenever someone asks which AMR package version you’re at.
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--------------------------------
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THE PART HEREAFTER CONTAINS CONTENTS FROM FILE 'NAMESPACE':
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@ -6140,7 +6140,7 @@ Ordered \link{factor} with levels \code{Negative} < \verb{Positive, unconfirmed}
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}
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}
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\description{
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Determine which isolates are multidrug-resistant organisms (MDRO) according to international, national and custom guidelines.
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Determine which isolates are multidrug-resistant organisms (MDRO) according to international, national, or custom guidelines.
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}
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\details{
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These functions are context-aware. This means that the \code{x} argument can be left blank if used inside a \link{data.frame} call, see \emph{Examples}.
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@ -6174,10 +6174,17 @@ The international guideline for multi-drug resistant tuberculosis - World Health
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The German national guideline - Mueller et al. (2015) Antimicrobial Resistance and Infection Control 4:7; \doi{10.1186/s13756-015-0047-6}
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\item \code{guideline = "BRMO"}
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The Dutch national guideline - Rijksinstituut voor Volksgezondheid en Milieu "WIP-richtlijn BRMO (Bijzonder Resistente Micro-Organismen) (ZKH)" (\href{https://www.rivm.nl/wip-richtlijn-brmo-bijzonder-resistente-micro-organismen-zkh}{link})
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The Dutch national guideline - Samenwerkingverband Richtlijnen Infectiepreventie (SRI) (2024) "Bijzonder Resistente Micro-Organismen (BRMO)" (\href{https://www.sri-richtlijnen.nl/brmo}{link})
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Also:
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\itemize{
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\item \code{guideline = "BRMO 2017"}
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The former Dutch national guideline - Werkgroep Infectiepreventie (WIP), RIVM, last revision as of 2017: "Bijzonder Resistente Micro-Organismen (BRMO)"
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}
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}
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Please suggest your own (country-specific) guidelines by letting us know: \url{https://github.com/msberends/AMR/issues/new}.
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Please suggest to implement guidelines by letting us know: \url{https://github.com/msberends/AMR/issues/new}.
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}
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\section{Using Custom Guidelines}{
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