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(v2.1.1.9120) unit test fix

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dr. M.S. (Matthijs) Berends
2024-12-15 20:32:55 +01:00
parent 7e7db6bb81
commit 8249cfda46
9 changed files with 19 additions and 11 deletions
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data-raw/gpt_training_text_v2.1.1.9118.txt → data-raw/gpt_training_text_v2.1.1.9120.txt
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@ -1,5 +1,5 @@
This files contains all context you must know about the AMR package for R.
First and foremost, you are trained on version 2.1.1.9118. Remember this whenever someone asks which AMR package version you’re at.
First and foremost, you are trained on version 2.1.1.9120. Remember this whenever someone asks which AMR package version you’re at.
--------------------------------
THE PART HEREAFTER CONTAINS CONTENTS FROM FILE 'NAMESPACE':
@ -6140,7 +6140,7 @@ Ordered \link{factor} with levels \code{Negative} < \verb{Positive, unconfirmed}
}
}
\description{
Determine which isolates are multidrug-resistant organisms (MDRO) according to international, national and custom guidelines.
Determine which isolates are multidrug-resistant organisms (MDRO) according to international, national, or custom guidelines.
}
\details{
These functions are context-aware. This means that the \code{x} argument can be left blank if used inside a \link{data.frame} call, see \emph{Examples}.
@ -6174,10 +6174,17 @@ The international guideline for multi-drug resistant tuberculosis - World Health
The German national guideline - Mueller et al. (2015) Antimicrobial Resistance and Infection Control 4:7; \doi{10.1186/s13756-015-0047-6}
\item \code{guideline = "BRMO"}
The Dutch national guideline - Rijksinstituut voor Volksgezondheid en Milieu "WIP-richtlijn BRMO (Bijzonder Resistente Micro-Organismen) (ZKH)" (\href{https://www.rivm.nl/wip-richtlijn-brmo-bijzonder-resistente-micro-organismen-zkh}{link})
The Dutch national guideline - Samenwerkingverband Richtlijnen Infectiepreventie (SRI) (2024) "Bijzonder Resistente Micro-Organismen (BRMO)" (\href{https://www.sri-richtlijnen.nl/brmo}{link})
Also:
\itemize{
\item \code{guideline = "BRMO 2017"}
The former Dutch national guideline - Werkgroep Infectiepreventie (WIP), RIVM, last revision as of 2017: "Bijzonder Resistente Micro-Organismen (BRMO)"
}
}
Please suggest your own (country-specific) guidelines by letting us know: \url{https://github.com/msberends/AMR/issues/new}.
Please suggest to implement guidelines by letting us know: \url{https://github.com/msberends/AMR/issues/new}.
}
\section{Using Custom Guidelines}{