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add add_custom_antimicrobials()

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dr. M.S. (Matthijs) Berends
2022-10-10 20:20:39 +02:00
parent 4fe90092c7
commit 82e3198315
8 changed files with 209 additions and 11 deletions
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NEWS.md
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# AMR 1.8.2.9009
# AMR 1.8.2.9010
This version will eventually become v2.0! We're happy to reach a new major milestone soon!
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* Function `mean_amr_distance()` to calculate the mean AMR distance. The mean AMR distance is a normalised numeric value to compare AMR test results and can help to identify similar isolates, without comparing antibiograms by hand.
* Function `rsi_interpretation_history()` to view the history of previous runs of `as.rsi()`. This returns a 'logbook' with the selected guideline, reference table and specific interpretation of each row in a data set on which `as.rsi()` was run.
* Function `mo_current()` to get the currently valid taxonomic name of a microorganism
* Function `add_custom_antimicrobials()` to add custom antimicrobial codes and names to the `AMR` package
* Support for `data.frame`-enhancing R packages, more specifically: `data.table::data.table`, `janitor::tabyl`, `tibble::tibble`, and `tsibble::tsibble`. AMR package functions that have a data set as output (such as `rsi_df()` and `bug_drug_combinations()`), will now return the same data type as the input.
* All data sets in this package are now exported as `tibble`, instead of base R `data.frame`s. Older R versions are still supported.
* Support for the following languages: Chinese, Greek, Japanese, Polish, Turkish and Ukrainian. We are very grateful for the valuable input by our colleagues from other countries. The `AMR` package is now available in 16 languages.