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fixes

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2022-09-18 14:00:29 +02:00
parent 0e6fb05aca
commit 835cf7c32d
6 changed files with 18 additions and 12 deletions
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11
inst/tinytest/test-_misc.R
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@ -31,11 +31,12 @@ expect_equal(AMR:::percentage(0.1234), "12.3%")
expect_equal(AMR:::percentage(0.0054), "0.5%")
expect_equal(AMR:::percentage(0.0055), "0.6%")
expect_equal(AMR:::strrep("A", 5), "AAAAA")
expect_equal(AMR:::strrep(c("A", "B"), c(5, 2)), c("AAAAA", "BB"))
expect_equal(AMR:::trimws(" test "), "test")
expect_equal(AMR:::trimws(" test ", "l"), "test ")
expect_equal(AMR:::trimws(" test ", "r"), " test")
# test functions on all R versions - R < 3.3 did not contain these
expect_equal(strrep("A", 5), "AAAAA")
expect_equal(strrep(c("A", "B"), c(5, 2)), c("AAAAA", "BB"))
expect_equal(trimws(" test "), "test")
expect_equal(trimws(" test ", "l"), "test ")
expect_equal(trimws(" test ", "r"), " test")
expect_warning(AMR:::generate_warning_abs_missing(c("AMP", "AMX")))
expect_warning(AMR:::generate_warning_abs_missing(c("AMP", "AMX"), any = TRUE))

2
inst/tinytest/test-eucast_rules.R
View File

@ -36,7 +36,7 @@ expect_equal(
)
)
MOs_mentioned <- unique(AMR:::EUCAST_RULES_DF$this_value)
MOs_mentioned <- sort(AMR:::trimws(unlist(strsplit(MOs_mentioned[!AMR:::is_valid_regex(MOs_mentioned)], ",", fixed = TRUE))))
MOs_mentioned <- sort(trimws(unlist(strsplit(MOs_mentioned[!AMR:::is_valid_regex(MOs_mentioned)], ",", fixed = TRUE))))
MOs_test <- suppressWarnings(suppressMessages(mo_name(MOs_mentioned)))
expect_true(length(MOs_mentioned[MOs_test != MOs_mentioned]) == 0)