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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -375,19 +375,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 S I S S R S</span></span>
<span><span class="co"># 2 S S R I S S</span></span>
<span><span class="co"># 3 I S I S I I</span></span>
<span><span class="co"># 4 R R I S S S</span></span>
<span><span class="co"># 5 I I S I S S</span></span>
<span><span class="co"># 6 S S R S S R</span></span>
<span><span class="co"># 1 S R R I S R</span></span>
<span><span class="co"># 2 S I R S S I</span></span>
<span><span class="co"># 3 I I R I S I</span></span>
<span><span class="co"># 4 R R I R I I</span></span>
<span><span class="co"># 5 I R S R R I</span></span>
<span><span class="co"># 6 I S S R S R</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 I</span></span>
<span><span class="co"># 2 S</span></span>
<span><span class="co"># 2 I</span></span>
<span><span class="co"># 3 I</span></span>
<span><span class="co"># 4 I</span></span>
<span><span class="co"># 4 S</span></span>
<span><span class="co"># 5 I</span></span>
<span><span class="co"># 6 I</span></span></code></pre></div>
<span><span class="co"># 6 S</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -428,40 +428,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3236</td>
<td align="right">64.72%</td>
<td align="right">3236</td>
<td align="right">64.72%</td>
<td align="right">3145</td>
<td align="right">62.90%</td>
<td align="right">3145</td>
<td align="right">62.90%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">965</td>
<td align="right">19.30%</td>
<td align="right">4201</td>
<td align="right">84.02%</td>
<td align="right">1012</td>
<td align="right">20.24%</td>
<td align="right">4157</td>
<td align="right">83.14%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">459</td>
<td align="right">9.18%</td>
<td align="right">4660</td>
<td align="right">93.20%</td>
<td align="right">506</td>
<td align="right">10.12%</td>
<td align="right">4663</td>
<td align="right">93.26%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">242</td>
<td align="right">4.84%</td>
<td align="right">4902</td>
<td align="right">98.04%</td>
<td align="right">253</td>
<td align="right">5.06%</td>
<td align="right">4916</td>
<td align="right">98.32%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">98</td>
<td align="right">1.96%</td>
<td align="right">84</td>
<td align="right">1.68%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>