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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9088</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9089</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -183,42 +183,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.005 0.025 16 0.002 1 1 8 2 64 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.125 8 256 0.001 0.0625 4 4 16 0.01 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.125 16 8 0.005 256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 64 0.01 2 32 1 0.25 128 64 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 1 8 32 8 8 0.002 2 256 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.125 8 0.5 0.01 32 <=0.001 4 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 43 42 49 41 7 15 8 46 35 41 14 32 43 26 27 21 45 38 49 50 37 45 6 28 20</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 36 17 9 45 47 30 42 42 19 11 44 33 18 48 9 44 19 45 31 48 31 9 12 14 34</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I S S R S R I I I I I R I I S S S R R I S S I S I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S R S I S S R R R R R R S I I S S I S R R R R S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 0.0625 0.25 64 0.5 16 0.005 0.125 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 4 4 0.5 1 0.025 2 0.025 32 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] <=0.002 0.005 1 0.5 4 32 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 1 0.01 0.01 0.5 <=0.001 0.25 2 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.025 32 0.002 8 4 16 >=128 1 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.005 0.002 32 0.5 1 0.01 8 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 4 16 16 2 8 16 16 8 16 16 2 <=1 16 4 <=1 16 <=1 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 16 2 16 <=1 8 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 0.5 16 <=0.25 8 4 8 16 >=64 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] >=64 4 >=64 32 <=0.25 16 4 1 >=64 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] <=0.25 1 32 32 32 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.125 0.25 >=4 1 1 0.5 <=0.125 0.25 >=4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 1 0.25 >=4 0.5 2 >=4 >=4 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 2 <=0.125 1 0.25 2 <=0.125 >=4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.5 1 4 8 1 0.5 8 0.125 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.5 1 0.0625 0.0625 4 1 8 1 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.125 0.5 1 0.125 8 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 27 23 48 33 20 30 48 15 19 46 27 14 27 39 10 50 23 50 11 37 29 35 33 12 18</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 41 50 34 42 44 13 43 44 48 46 19 13 36 18 9 43 43 27 29 43 36 45 24 48 41</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 14 14 16 13 15 17 12 14 11 11 14 13 11 17 17 17 16 17 17 17 17 13 15 17</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 12 16 11 11 12 14 15 15 13 13 16 15 12 14 11 14 12 11 16 12 17 14 13 15</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 25 16 20 15 23 26 16 22 15 22 15 15 25 20 20 20 15 24 15 25 15 21 20 18 25</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 27 16 15 27 22 27 25 20 18 22 18 18 16 24 20 27 19 19 17 22 20 23 23 22 19</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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