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remove warnings from unit tests

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dr. M.S. (Matthijs) Berends
2022-10-19 11:47:57 +02:00
parent fed3b6440f
commit 85e2fbe4a3
35 changed files with 115 additions and 110 deletions
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10
man/as.mic.Rd
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@ -22,7 +22,7 @@ is.mic(x)
\item{na.rm}{a \link{logical} indicating whether missing values should be removed}
\item{as.mic}{a \link{logical} to indicate whether the \verb{<mic>} class should be kept, defaults to \code{FALSE}}
\item{as.mic}{a \link{logical} to indicate whether the \code{mic} class should be kept, defaults to \code{FALSE}}
\item{...}{arguments passed on to methods}
}
@ -39,7 +39,7 @@ This class for MIC values is a quite a special data type: formally it is an orde
\if{html}{\out{<div class="sourceCode">}}\preformatted{x <- random_mic(10)
x
#> Class <mic>
#> Class 'mic'
#> [1] 16 1 8 8 64 >=128 0.0625 32 32 16
is.factor(x)
@ -55,7 +55,7 @@ median(x)
This makes it possible to maintain operators that often come with MIC values, such ">=" and "<=", even when filtering using \link{numeric} values in data analysis, e.g.:
\if{html}{\out{<div class="sourceCode">}}\preformatted{x[x > 4]
#> Class <mic>
#> Class 'mic'
#> [1] 16 8 8 64 >=128 32 32 16
df <- data.frame(x, hospital = "A")
@ -73,9 +73,9 @@ The following \link[=groupGeneric]{generic functions} are implemented for the MI
Using \code{\link[=as.double]{as.double()}} or \code{\link[=as.numeric]{as.numeric()}} on MIC values will remove the operators and return a numeric vector. Do \strong{not} use \code{\link[=as.integer]{as.integer()}} on MIC values as by the \R convention on \link{factor}s, it will return the index of the factor levels (which is often useless for regular users).
Use \code{\link[=droplevels]{droplevels()}} to drop unused levels. At default, it will return a plain factor. Use \code{droplevels(..., as.mic = TRUE)} to maintain the \verb{<mic>} class.
Use \code{\link[=droplevels]{droplevels()}} to drop unused levels. At default, it will return a plain factor. Use \code{droplevels(..., as.mic = TRUE)} to maintain the \code{mic} class.
\code{NA_mic_} is a missing value of the new \verb{<mic>} class, analogous to e.g. base \R's \code{\link[base:NA]{NA_character_}}.
\code{NA_mic_} is a missing value of the new \code{mic} class, analogous to e.g. base \R's \code{\link[base:NA]{NA_character_}}.
}
\examples{
mic_data <- as.mic(c(">=32", "1.0", "1", "1.00", 8, "<=0.128", "8", "16", "16"))