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(v2.1.1.9196) fix eucast, unit tests

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dr. M.S. (Matthijs) Berends
2025-03-13 15:38:39 +01:00
parent 9aab129ea6
commit 861331b1df
25 changed files with 114 additions and 97 deletions
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man/clinical_breakpoints.Rd
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@ -5,7 +5,7 @@
\alias{clinical_breakpoints}
\title{Data Set with Clinical Breakpoints for SIR Interpretation}
\format{
A \link[tibble:tibble]{tibble} with 34 382 observations and 14 variables:
A \link[tibble:tibble]{tibble} with 34 376 observations and 14 variables:
\itemize{
\item \code{guideline}\cr Name of the guideline
\item \code{type}\cr Breakpoint type, either "ECOFF", "animal", or "human"
@ -33,7 +33,7 @@ These breakpoints are currently implemented:
\itemize{
\item For \strong{clinical microbiology}: EUCAST 2011-2024 and CLSI 2011-2024;
\item For \strong{veterinary microbiology}: EUCAST 2021-2024 and CLSI 2019-2024;
\item For \strong{ECOFFs} (Epidemiological Cut-off Values): EUCAST 2020-2024 and CLSI 2022-2024.
\item For \strong{ECOFFs} (Epidemiological Cut-off Values): EUCAST 2012-2024 and CLSI 2022-2024.
}
Use \code{\link[=as.sir]{as.sir()}} to transform MICs or disks measurements to SIR values.