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@@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9042</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9043</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@@ -178,41 +178,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 0.01 2 0.5 8 1 2 2 0.5 0.5 0.001 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.002 0.25 1 0.005 64 64 0.5 4 128 0.002 0.01 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 16 0.125 0.0625 256 0.125 256 <=0.001 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.005 16 0.01 0.5 0.002 128 0.0625 0.025 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.01 0.125 128 1 128 0.005 4 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 40 49 45 11 23 49 42 12 7 44 50 23 47 41 27 47 50 33 18 18 38 21 40 12</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 49 27 35 49 28 36 14 43 14 22 36 45 40 39 42 16 25 31 44 21 43 28 17 21 47</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R R I R R I I R I S I R S S R S I I R S S I R R I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S S S I R R R R S R I R I S R I S S R R I I R I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 0.025 128 0.5 0.002 4 0.125 0.125 0.5 8 0.01 0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 8 2 64 0.5 0.5 0.025 0.01 8 0.125 0.5 0.5 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 0.005 1 0.0625 4 0.5 2 8 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] >=64 >=64 1 1 4 16 2 <=0.001 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.125 0.025 0.002 8 0.5 0.125 1 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 16 2 2 2 8 8 2 4 1 2 1 1 4 1 1 16 8 16 4 2 8 1 2 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 16 2 2 8 >=32 4 <=0.5 <=0.5 16 <=0.5 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 2 2 1 2 1 <=0.5 2 2 1 1 16 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] <=0.5</span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.25 0.125 0.0625 0.125 0.125 4 1 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 0.125 0.5 <=0.025 0.25 2 <=0.025 0.125 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.0625 4 0.25 2 <=0.025 0.25 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 8 16 4 0.25 1 4 2 0.125 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 2 8 0.0625 0.0625 16 8 0.0625 1 1 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.5 0.25 0.25 0.25 1 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 31 45 32 40 26 48 46 43 10 41 45 33 23 41 25 26 18 16 16 49 26 14 21 10</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 31 9 31 44 38 45 43 14 30 14 46 25 17 36 30 34 25 11 29 29 12 23 21 44</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 15 13 13 17 14 11 15 11 12 15 15 15 12 14 13 16 16 15 14 15 16 16 16 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 13 13 13 17 13 17 14 15 11 12 15 16 16 11 12 14 11 11 11 17 15 16 11 11</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 19 22 23 20 25 24 26 24 27 18 22 21 22 26 25 24 15 15 22 20 22 22 20 25 21</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 27 19 22 23 16 22 27 21 26 19 16 16 18 26 25 23 19 16 17 27 26 16 23 16 20</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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