diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml index 4d44a918..b042fa14 100644 --- a/.github/workflows/check.yaml +++ b/.github/workflows/check.yaml @@ -108,6 +108,12 @@ jobs: run: | sudo apt install -y libssl-dev pandoc pandoc-citeproc libxml2-dev libicu-dev libcurl4-openssl-dev + - name: Install AMR package + if: always() + run: | + R CMD install data-raw/AMR_latest.tar.gz + shell: bash + - name: Update package dependencies run: | source("data-raw/_install_deps.R") diff --git a/DESCRIPTION b/DESCRIPTION index a4650e8f..c2dff861 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 1.6.0.9031 +Version: 1.6.0.9032 Date: 2021-05-15 Title: Antimicrobial Resistance Data Analysis Authors@R: c( diff --git a/NEWS.md b/NEWS.md index 2f768204..625acc60 100755 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# `AMR` 1.6.0.9031 +# `AMR` 1.6.0.9032 ## Last updated: 15 May 2021 ### New diff --git a/data-raw/_install_deps.R b/data-raw/_install_deps.R index b1aa9ac7..943646e6 100644 --- a/data-raw/_install_deps.R +++ b/data-raw/_install_deps.R @@ -23,7 +23,7 @@ # how to conduct AMR data analysis: https://msberends.github.io/AMR/ # # ==================================================================== # -pkg_suggests <- trimws(unlist(strsplit(packageDescription("AMR")$Suggests, ",(\n)?"))) +pkg_suggests <- AMR:::trimws(unlist(strsplit(packageDescription("AMR")$Suggests, ",(\n)?"))) to_install <- pkg_suggests[!pkg_suggests %in% rownames(utils::installed.packages())] to_update <- as.data.frame(old.packages(), stringsAsFactors = FALSE)