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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9135</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9137</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,42 +193,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 0.5 0.005 8 0.0625 0.025 128 0.5 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] <=0.001 <=0.001 0.025 0.0625 32 128 0.01 2 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 >=256 0.0625 0.125 0.25 0.5 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.001 0.01 0.5 0.005 16 0.01 0.125 2 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 1 8 0.5 0.01 64 128 256 128 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 2 256 0.005 0.125 1 <=0.001 2 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 41 13 29 25 39 21 41 12 42 22 22 46 34 48 43 18 18 16 41 49 37 13 28 50 46</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 49 14 6 19 16 27 29 24 37 47 22 42 45 48 38 50 50 44 29 42 9 34 48 42 47</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R I S R I I R S I S R S R I S R R S R R S S R I I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S S R I S I R R R S I R S R I S S R R S I I S R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.002 0.25 0.125 0.125 0.0625 16 64 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 32 0.25 1 0.005 0.025 128 <=0.001 0.002 <=0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 2 4 8 0.0625 0.01 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.001 8 0.001 0.025 0.5 16 0.5 0.005 1 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.0625 16 0.025 0.5 0.5 64 0.125 0.25 0.001 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.025 32 2 2 0.25 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 0.5 2 4 32 1 1 8 0.5 32 8 32 16 2 2 4 8 32 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 4 0.5 16 2 1 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 >=32 >=32 8 16 4 1 <=0.5 >=32 1 1 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 8 2 <=0.5 8 8 16 4 16 2 >=32 16 <=0.5</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] <=0.5</span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.5 0.5 0.125 0.125 8 0.0625 0.5 4 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 2 0.0625 2 0.125 0.5 1 16 0.0625 0.5 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.5 1 0.25 0.0625 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 4 0.125 2 1 0.0625 0.0625 8 0.5 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.0625 0.125 0.025 4 8 1 4 0.0625 0.0625 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.025 0.025 2 8 4 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 47 12 24 18 30 9 41 41 46 9 46 18 46 41 42 24 41 31 37 27 46 19 43 24</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 48 32 50 49 47 30 38 18 49 32 25 47 11 48 17 38 12 42 50 43 45 46 43 48 49</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 15 11 13 16 11 13 16 13 12 17 12 13 16 16 15 17 16 17 12 14 15 12 12 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 15 13 16 12 17 17 14 15 12 12 14 17 13 17 11 12 15 14 11 17 17 15 15 13</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 22 19 21 20 22 25 15 16 16 25 22 22 15 21 19 16 23 22 16 23 21 19 26 18</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 20 22 24 25 19 19 20 21 21 16 19 24 22 23 17 18 25 26 22 17 15 19 19 15</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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