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@@ -36,8 +36,8 @@ A [tibble](https://tibble.tidyverse.org/reference/tibble.html) with 78
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name of the taxon. ***This is a unique identifier.***
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- `status`
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Status of the taxon, either .val accepted, .val not validly published,
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.val synonym, or .val unknown
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Status of the taxon, either `"accepted"`, `"not validly published"`,
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`"synonym"`, or `"unknown"`
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- `kingdom`, `phylum`, `class`, `order`, `family`, `genus`, `species`,
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`subspecies`
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@@ -59,17 +59,18 @@ A [tibble](https://tibble.tidyverse.org/reference/tibble.html) with 78
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comply with CRAN that only allows ASCII characters.
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- `oxygen_tolerance`
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Oxygen tolerance, either .val aerobe, .val anaerobe, .val
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anaerobe/microaerophile, .val facultative anaerobe, .val likely
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facultative anaerobe, .val microaerophile, or NA. These data were
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retrieved from BacDive (see *Source*). Items that contain "likely" are
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missing from BacDive and were extrapolated from other species within
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the same genus to guess the oxygen tolerance. Currently 68.3% of all
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~39 000 bacteria in the data set contain an oxygen tolerance.
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Oxygen tolerance, either `"aerobe"`, `"anaerobe"`,
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`"anaerobe/microaerophile"`, `"facultative anaerobe"`,
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`"likely facultative anaerobe"`, `"microaerophile"`, or NA. These data
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were retrieved from BacDive (see *Source*). Items that contain
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"likely" are missing from BacDive and were extrapolated from other
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species within the same genus to guess the oxygen tolerance. Currently
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68.3% of all ~39 000 bacteria in the data set contain an oxygen
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tolerance.
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- `source`
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Either .val GBIF, .val LPSN, .val Manually added, .val MycoBank, or
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.val manually added (see *Source*)
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Either `"GBIF"`, `"LPSN"`, `"Manually added"`, `"MycoBank"`, or
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`"manually added"` (see *Source*)
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- `lpsn`
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Identifier ('Record number') of List of Prokaryotic names with
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