1
0
mirror of https://github.com/msberends/AMR.git synced 2026-05-31 18:21:44 +02:00

Built site for AMR@3.0.1.9045: 8ff5d44

This commit is contained in:
github-actions
2026-04-21 20:03:58 +00:00
parent f2e56dbc61
commit 86b5ebf61f
105 changed files with 520 additions and 389 deletions

View File

@@ -36,8 +36,8 @@ A [tibble](https://tibble.tidyverse.org/reference/tibble.html) with 78
name of the taxon. ***This is a unique identifier.***
- `status`
Status of the taxon, either .val accepted, .val not validly published,
.val synonym, or .val unknown
Status of the taxon, either `"accepted"`, `"not validly published"`,
`"synonym"`, or `"unknown"`
- `kingdom`, `phylum`, `class`, `order`, `family`, `genus`, `species`,
`subspecies`
@@ -59,17 +59,18 @@ A [tibble](https://tibble.tidyverse.org/reference/tibble.html) with 78
comply with CRAN that only allows ASCII characters.
- `oxygen_tolerance`
Oxygen tolerance, either .val aerobe, .val anaerobe, .val
anaerobe/microaerophile, .val facultative anaerobe, .val likely
facultative anaerobe, .val microaerophile, or NA. These data were
retrieved from BacDive (see *Source*). Items that contain "likely" are
missing from BacDive and were extrapolated from other species within
the same genus to guess the oxygen tolerance. Currently 68.3% of all
~39 000 bacteria in the data set contain an oxygen tolerance.
Oxygen tolerance, either `"aerobe"`, `"anaerobe"`,
`"anaerobe/microaerophile"`, `"facultative anaerobe"`,
`"likely facultative anaerobe"`, `"microaerophile"`, or NA. These data
were retrieved from BacDive (see *Source*). Items that contain
"likely" are missing from BacDive and were extrapolated from other
species within the same genus to guess the oxygen tolerance. Currently
68.3% of all ~39 000 bacteria in the data set contain an oxygen
tolerance.
- `source`
Either .val GBIF, .val LPSN, .val Manually added, .val MycoBank, or
.val manually added (see *Source*)
Either `"GBIF"`, `"LPSN"`, `"Manually added"`, `"MycoBank"`, or
`"manually added"` (see *Source*)
- `lpsn`
Identifier ('Record number') of List of Prokaryotic names with