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add mo_pathogenicity

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dr. M.S. (Matthijs) Berends committed 2023-01-06 13:35:37 +01:00
1 parent 4801a6067e
commit 86e28bafce
8 files changed
+106 -25
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inst/tinytest/test-mo_property.R
+3
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@@ -102,6 +102,9 @@ expect_equal(names(mo_info("Escherichia coli")), c(
))
expect_inherits(mo_info(c("Escherichia coli", "Staphylococcus aureus")), "list")
expect_equal(as.character(table(mo_pathogenicity(example_isolates$mo)))
c("1561", "422", "1", "16"))
expect_equal(mo_ref("Escherichia coli"), "Castellani et al., 1919")
expect_equal(mo_authors("Escherichia coli"), "Castellani et al.")
expect_equal(mo_year("Escherichia coli"), 1919)