recipes
step_mic_log2()
<mic>
step_sir_numeric()
<sir>
ab_group()
all_groups
antibiogram()
TAN
FTA
antimicrobials
as.sir()
S
i
R
In case of set_ab_names() and data is a data.frame: columns to select (supports tidy selection such as column1:column4), otherwise other arguments passed on to as.ab().
set_ab_names()
data
column1:column4
as.ab()
A logical to indicate whether all antimicrobial groups must be return as a vector for each input value. For example, an antibiotic in the "aminopenicillins" group, is also in the "penicillins" and "beta-lactams" groups. Setting all_groups = TRUE would return all three for such an antibiotic, while all_groups = FALSE (default) only returns the most distinctive group name.
all_groups = TRUE
all_groups = FALSE
A logical to indicate whether only the first ATC code must be returned, with giving preference to J0-codes (i.e., the antimicrobial drug group).