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@ -38,7 +38,7 @@
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@ -375,19 +375,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 S R S R R R</span></span>
<span><span class="co"># 2 R S I S I S</span></span>
<span><span class="co"># 3 R R S S I I</span></span>
<span><span class="co"># 4 I R R S S S</span></span>
<span><span class="co"># 5 S R I I I R</span></span>
<span><span class="co"># 6 R R I S R I</span></span>
<span><span class="co"># 1 I S I I R R</span></span>
<span><span class="co"># 2 I R R I I I</span></span>
<span><span class="co"># 3 R R R I R R</span></span>
<span><span class="co"># 4 R R R I R R</span></span>
<span><span class="co"># 5 S I I I S R</span></span>
<span><span class="co"># 6 I I R I R I</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 R</span></span>
<span><span class="co"># 1 I</span></span>
<span><span class="co"># 2 S</span></span>
<span><span class="co"># 3 S</span></span>
<span><span class="co"># 4 I</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 6 I</span></span></code></pre></div>
<span><span class="co"># 4 R</span></span>
<span><span class="co"># 5 R</span></span>
<span><span class="co"># 6 R</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -428,40 +428,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3191</td>
<td align="right">63.82%</td>
<td align="right">3191</td>
<td align="right">63.82%</td>
<td align="right">3197</td>
<td align="right">63.94%</td>
<td align="right">3197</td>
<td align="right">63.94%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">1014</td>
<td align="right">20.28%</td>
<td align="right">4205</td>
<td align="right">84.10%</td>
<td align="right">998</td>
<td align="right">19.96%</td>
<td align="right">4195</td>
<td align="right">83.90%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">474</td>
<td align="right">9.48%</td>
<td align="right">4679</td>
<td align="right">93.58%</td>
<td align="right">446</td>
<td align="right">8.92%</td>
<td align="right">4641</td>
<td align="right">92.82%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">225</td>
<td align="right">4.50%</td>
<td align="right">4904</td>
<td align="right">98.08%</td>
<td align="right">241</td>
<td align="right">4.82%</td>
<td align="right">4882</td>
<td align="right">97.64%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">96</td>
<td align="right">1.92%</td>
<td align="right">118</td>
<td align="right">2.36%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>