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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9079</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9080</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -183,42 +183,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 128 0.025 2 1 32 0.125 16 >=256 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.025 <=0.002 0.01 1 <=0.002 >=256 2 16 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 4 64 8 8 0.005 0.0625 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.001 16 2 >=64 0.125 1 0.002 0.5 0.001 >=64 8 0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 2 >=64 >=64 0.125 0.005 8 0.125 >=64 0.025 4 0.01 >=64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.01 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 37 44 23 13 39 50 44 18 36 31 40 46 36 29 34 45 32 48 46 45 28 10 50 17 47</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 31 20 47 41 23 31 34 40 35 9 42 37 46 38 31 41 27 33 49 27 31 21 35 7 48</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I I S I I S I I R R I S S I S I S S R I R R R I S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I R I S I S S R R S S I S I R I S S I I S S I R S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 <=0.001 8 <=0.001 >=256 0.025 <=0.001 0.5 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 2 0.002 0.002 1 128 0.125 <=0.001 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 4 0.125 2 128 16 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 0.01 8 0.01 >=64 8 16 0.125 0.25 >=64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 32 0.002 0.005 0.002 >=64 0.5 2 8 >=64 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.01 4 0.005 2 0.005 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 8 <=1 2 32 8 8 4 4 8 2 8 16 2 64 4 <=1 <=1 <=1</span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 32 4 2 8 16 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 8 2 <=0.5 2 <=0.5 2 16 2 4 <=0.5 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 2 1 8 8 16 1 <=0.5 1 16 16 <=0.5 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.125 0.5 1 <=0.125 0.25 4 0.25 0.5 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.5 4 2 <=0.125 >=8 0.5 >=8 0.5 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 >=8 0.25 1 <=0.125 <=0.125 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.25 0.125 1 4 >=8 0.25 2 2 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 1 4 0.125 0.0625 0.0625 1 1 1 1 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.5 2 0.125 0.125 >=8 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 37 15 44 15 46 50 48 20 41 40 41 25 41 50 47 40 20 27 18 16 47 42 45 40 46</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 45 44 33 12 44 48 13 43 34 26 12 10 37 46 48 45 12 44 15 35 31 47 30 33 41</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 16 15 13 13 17 16 13 16 14 14 13 11 17 12 17 12 16 16 17 17 11 14 16 13</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 11 11 12 11 14 13 11 11 16 14 11 14 16 17 11 17 14 14 14 14 13 11 12 14</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 19 22 23 22 24 18 25 23 26 25 19 21 18 18 23 15 24 17 17 24 22 20 26 26 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 21 19 19 24 22 16 17 21 24 23 17 21 27 18 19 17 16 27 16 18 27 23 15 25</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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