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mirror of https://github.com/msberends/AMR.git synced 2025-07-12 22:21:52 +02:00

added boxplot for (grouped) freq()

This commit is contained in:
2019-05-29 19:56:17 +02:00
parent 62e6f41961
commit 8b5e2b030b
20 changed files with 464 additions and 297 deletions

11
NEWS.md
View File

@ -28,6 +28,17 @@
* Frequency tables (`freq()`):
* speed improvement for microbial IDs
* fixed level names in markdown
* support for boxplots:
```r
septic_patients %>%
freq(age) %>%
boxplot()
# grouped boxplots:
septic_patients %>%
group_by(hospital_id) %>%
freq(age) %>%
boxplot()
```
* Removed all hardcoded EUCAST rules and replaced them with a new reference file: `./inst/eucast/eucast.tsv`
* Added ceftazidim intrinsic resistance to *Streptococci*
* Changed default settings for `age_groups()`, to let groups of fives and tens end with 100+ instead of 120+