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(v1.2.0.9004) rsi_df() fix for groups

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dr. M.S. (Matthijs) Berends
2020-06-09 16:18:03 +02:00
parent 40221e5244
commit 8b692ecfcf
17 changed files with 68 additions and 32 deletions
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15
docs/news/index.html
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@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9003</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9004</span>
</span>
</div>
@ -229,13 +229,13 @@
<small>Source: <a href='https://gitlab.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div>
<div id="amr-1209003" class="section level1">
<h1 class="page-header" data-toc-text="1.2.0.9003">
<a href="#amr-1209003" class="anchor"></a>AMR 1.2.0.9003<small> Unreleased </small>
<div id="amr-1209004" class="section level1">
<h1 class="page-header" data-toc-text="1.2.0.9004">
<a href="#amr-1209004" class="anchor"></a>AMR 1.2.0.9004<small> Unreleased </small>
</h1>
<div id="last-updated-05-jun-2020" class="section level2">
<div id="last-updated-09-jun-2020" class="section level2">
<h2 class="hasAnchor">
<a href="#last-updated-05-jun-2020" class="anchor"></a><small>Last updated: 05-Jun-2020</small>
<a href="#last-updated-09-jun-2020" class="anchor"></a><small>Last updated: 09-Jun-2020</small>
</h2>
<div id="changed" class="section level3">
<h3 class="hasAnchor">
@ -244,9 +244,12 @@
<li>Fixed a bug where <code><a href="../reference/eucast_rules.html">eucast_rules()</a></code> would not work on a tibble when the <code>tibble</code> or <code>dplyr</code> package was loaded</li>
<li>All <code>*_join_microorganisms()</code> functions now return the original data class (e.g. tibbles and data.tables)</li>
<li>Fixed a bug where <code><a href="../reference/as.ab.html">as.ab()</a></code> would return an error on invalid input values</li>
<li>Fixed a bug for using grouped versions of <code><a href="../reference/proportion.html">rsi_df()</a></code>, <code><a href="../reference/proportion.html">proportion_df()</a></code> and <code><a href="../reference/count.html">count_df()</a></code>
</li>
<li>Added function <code><a href="../reference/filter_ab_class.html">filter_penicillins()</a></code> to filter isolates on a specific result in any column with a name in the antimicrobial ‘penicillins’ class (more specific: ATC subgroup <em>Beta-lactam antibacterials, penicillins</em>)</li>
<li>Added official antimicrobial names to all <code><a href="../reference/filter_ab_class.html">filter_ab_class()</a></code> functions, such as <code><a href="../reference/filter_ab_class.html">filter_aminoglycosides()</a></code>
</li>
<li>Added antibiotics code “FOX1” for cefoxitin screening (abbreviation “cfsc”) to the <code>antibiotics</code> data set</li>
</ul>
</div>
</div>