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18
llms.txt
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@@ -208,10 +208,10 @@ antibiogram(example_isolates,
language = "uk") # Ukrainian
```
| Збудник | Ciprofloxacin | Гентаміцин | Тобраміцин |
|:--------------|:-------------------|:--------------------|:-------------------|
| Gram-negative | 91% (88-93%,N=684) | 96% (95-98%,N=684) | 96% (94-97%,N=686) |
| Gram-positive | 77% (74-80%,N=724) | 63% (60-66%,N=1170) | 34% (31-38%,N=665) |
| Збудник | Гентаміцин | Тобраміцин | Ципрофлоксацин |
|:--------------|:--------------------|:-------------------|:-------------------|
| Грамнегативні | 96% (95-98%,N=684) | 96% (94-97%,N=686) | 91% (88-93%,N=684) |
| Грампозитивні | 63% (60-66%,N=1170) | 34% (31-38%,N=665) | 77% (74-80%,N=724) |
### Interpreting and plotting MIC and SIR values
@@ -594,7 +594,7 @@ guidelines. Afterwards, you can extend antibiotic interpretations by
applying [EUCAST
rules](https://www.eucast.org/expert_rules_and_intrinsic_resistance/)
with
[`eucast_rules()`](https://amr-for-r.org/reference/eucast_rules.md).
[`eucast_rules()`](https://amr-for-r.org/reference/interpretive_rules.md).
- [`as.sir()`](https://amr-for-r.org/reference/as.sir.md)
[`NA_sir_`](https://amr-for-r.org/reference/as.sir.md)
@@ -614,9 +614,11 @@ with
[`NA_disk_`](https://amr-for-r.org/reference/as.disk.md)
[`is.disk()`](https://amr-for-r.org/reference/as.disk.md) : Transform
Input to Disk Diffusion Diameters
- [`eucast_rules()`](https://amr-for-r.org/reference/eucast_rules.md)
[`eucast_dosage()`](https://amr-for-r.org/reference/eucast_rules.md) :
Apply EUCAST Rules
- [`interpretive_rules()`](https://amr-for-r.org/reference/interpretive_rules.md)
[`eucast_rules()`](https://amr-for-r.org/reference/interpretive_rules.md)
[`clsi_rules()`](https://amr-for-r.org/reference/interpretive_rules.md)
[`eucast_dosage()`](https://amr-for-r.org/reference/interpretive_rules.md)
: Apply Interpretive Rules
- [`custom_eucast_rules()`](https://amr-for-r.org/reference/custom_eucast_rules.md)
: Define Custom EUCAST Rules