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reference/custom_eucast_rules.md
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Define custom EUCAST rules for your organisation or specific analysis
and use the output of this function in
[`eucast_rules()`](https://amr-for-r.org/reference/eucast_rules.md).
[`eucast_rules()`](https://amr-for-r.org/reference/interpretive_rules.md).
## Usage
@@ -25,13 +25,13 @@ A [list](https://rdrr.io/r/base/list.html) containing the custom rules
Some organisations have their own adoption of EUCAST rules. This
function can be used to define custom EUCAST rules to be used in the
[`eucast_rules()`](https://amr-for-r.org/reference/eucast_rules.md)
[`eucast_rules()`](https://amr-for-r.org/reference/interpretive_rules.md)
function.
### Basics
If you are familiar with the
[`case_when()`](https://dplyr.tidyverse.org/reference/case_when.html)
[`case_when()`](https://dplyr.tidyverse.org/reference/case-and-replace-when.html)
function of the `dplyr` package, you will recognise the input method to
set your own rules. Rules must be set using what R considers to be the
'formula notation'. The rule itself is written *before* the tilde (`~`)