P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2026-02-09 13:52:54 +01:00
Code Releases Activity

Built site for AMR@3.0.1.9019: ba4c159

Browse Source
This commit is contained in:
github-actions
2026-02-08 22:40:23 +00:00
parent 0551ea51cb
commit 8b71d0eb99
255 changed files with 23625 additions and 810 deletions
Download Patch File Download Diff File Expand all files Collapse all files

10
reference/microorganisms.md
View File

@@ -61,11 +61,11 @@ A [tibble](https://tibble.tidyverse.org/reference/tibble.html) with 78
- `oxygen_tolerance`
Oxygen tolerance, either "aerobe", "anaerobe",
"anaerobe/microaerophile", "facultative anaerobe", "likely facultative
anaerobe", or "microaerophile". These data were retrieved from BacDive
(see *Source*). Items that contain "likely" are missing from BacDive
and were extrapolated from other species within the same genus to
guess the oxygen tolerance. Currently 68.3% of all ~39 000 bacteria in
the data set contain an oxygen tolerance.
anaerobe", "microaerophile", or NA. These data were retrieved from
BacDive (see *Source*). Items that contain "likely" are missing from
BacDive and were extrapolated from other species within the same genus
to guess the oxygen tolerance. Currently 68.3% of all ~39 000 bacteria
in the data set contain an oxygen tolerance.
- `source`
Either "GBIF", "LPSN", "Manually added", "MycoBank", or "manually