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10
reference/mo_property.md
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@@ -180,9 +180,8 @@ mo_property(x, property = "fullname", language = get_AMR_locale(),
- An [integer](https://rdrr.io/r/base/integer.html) in case of
`mo_year()`
- An [ordered
factor](https://rdatatable.gitlab.io/data.table/reference/fctr.html)
in case of `mo_pathogenicity()`
- An [ordered factor](https://rdrr.io/pkg/data.table/man/fctr.html) in
case of `mo_pathogenicity()`
- A [list](https://rdrr.io/r/base/list.html) in case of `mo_taxonomy()`,
`mo_synonyms()`, `mo_snomed()`, and `mo_info()`
@@ -240,9 +239,8 @@ Determination of human pathogenicity (`mo_pathogenicity()`) is strongly
based on Bartlett *et al.* (2022,
[doi:10.1099/mic.0.001269](https://doi.org/10.1099/mic.0.001269) ). This
function returns a
[factor](https://rdatatable.gitlab.io/data.table/reference/fctr.html)
with the levels *Pathogenic*, *Potentially pathogenic*,
*Non-pathogenic*, and *Unknown*.
[factor](https://rdrr.io/pkg/data.table/man/fctr.html) with the levels
*Pathogenic*, *Potentially pathogenic*, *Non-pathogenic*, and *Unknown*.
Determination of the Gram stain (`mo_gramstain()`) will be based on the
taxonomic kingdom and phylum. Originally, Cavalier-Smith defined the