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mirror of https://github.com/msberends/AMR.git synced 2025-07-26 03:15:56 +02:00

(v2.1.1.9141) new AMR selectors, eucast overwrite arg

This commit is contained in:
2025-02-07 18:01:22 +01:00
parent baea4323c7
commit 8ba2e4ed94
42 changed files with 282 additions and 197 deletions

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@ -1,6 +1,6 @@
Metadata-Version: 2.2
Name: AMR
Version: 2.1.1.9140
Version: 2.1.1.9141
Summary: A Python wrapper for the AMR R package
Home-page: https://github.com/msberends/AMR
Author: Matthijs Berends

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@ -45,9 +45,11 @@ from .functions import cephalosporins_4th
from .functions import cephalosporins_5th
from .functions import fluoroquinolones
from .functions import glycopeptides
from .functions import isoxazolylpenicillins
from .functions import lincosamides
from .functions import lipoglycopeptides
from .functions import macrolides
from .functions import monobactams
from .functions import nitrofurans
from .functions import oxazolidinones
from .functions import penicillins

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@ -165,6 +165,9 @@ def fluoroquinolones(only_sir_columns = False, *args, **kwargs):
def glycopeptides(only_sir_columns = False, *args, **kwargs):
"""See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
return convert_to_python(amr_r.glycopeptides(only_sir_columns = False, *args, **kwargs))
def isoxazolylpenicillins(only_sir_columns = False, *args, **kwargs):
"""See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
return convert_to_python(amr_r.isoxazolylpenicillins(only_sir_columns = False, *args, **kwargs))
def lincosamides(only_sir_columns = False, *args, **kwargs):
"""See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
return convert_to_python(amr_r.lincosamides(only_sir_columns = False, *args, **kwargs))
@ -174,6 +177,9 @@ def lipoglycopeptides(only_sir_columns = False, *args, **kwargs):
def macrolides(only_sir_columns = False, *args, **kwargs):
"""See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
return convert_to_python(amr_r.macrolides(only_sir_columns = False, *args, **kwargs))
def monobactams(only_sir_columns = False, *args, **kwargs):
"""See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
return convert_to_python(amr_r.monobactams(only_sir_columns = False, *args, **kwargs))
def nitrofurans(only_sir_columns = False, *args, **kwargs):
"""See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
return convert_to_python(amr_r.nitrofurans(only_sir_columns = False, *args, **kwargs))

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@ -2,7 +2,7 @@ from setuptools import setup, find_packages
setup(
name='AMR',
version='2.1.1.9140',
version='2.1.1.9141',
packages=find_packages(),
install_requires=[
'rpy2',