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(v2.1.1.9141) new AMR selectors, eucast overwrite arg

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dr. M.S. (Matthijs) Berends
2025-02-07 18:01:22 +01:00
parent baea4323c7
commit 8ba2e4ed94
42 changed files with 282 additions and 197 deletions
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16
R/amr_selectors.R
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@ -403,6 +403,14 @@ glycopeptides <- function(only_sir_columns = FALSE, return_all = TRUE, ...) {
amr_select_exec("glycopeptides", only_sir_columns = only_sir_columns, return_all = return_all)
}
#' @rdname antimicrobial_class_selectors
#' @export
isoxazolylpenicillins <- function(only_sir_columns = FALSE, return_all = TRUE, ...) {
meet_criteria(only_sir_columns, allow_class = "logical", has_length = 1)
meet_criteria(return_all, allow_class = "logical", has_length = 1)
amr_select_exec("isoxazolylpenicillins", only_sir_columns = only_sir_columns, return_all = return_all)
}
#' @rdname antimicrobial_class_selectors
#' @export
lincosamides <- function(only_sir_columns = FALSE, only_treatable = TRUE, return_all = TRUE, ...) {
@ -428,6 +436,14 @@ macrolides <- function(only_sir_columns = FALSE, return_all = TRUE, ...) {
amr_select_exec("macrolides", only_sir_columns = only_sir_columns, return_all = return_all)
}
#' @rdname antimicrobial_class_selectors
#' @export
monobactams <- function(only_sir_columns = FALSE, return_all = TRUE, ...) {
meet_criteria(only_sir_columns, allow_class = "logical", has_length = 1)
meet_criteria(return_all, allow_class = "logical", has_length = 1)
amr_select_exec("monobactams", only_sir_columns = only_sir_columns, return_all = return_all)
}
#' @rdname antimicrobial_class_selectors
#' @export
nitrofurans <- function(only_sir_columns = FALSE, return_all = TRUE, ...) {