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(v0.7.1.9092) as.ab() improvements

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dr. M.S. (Matthijs) Berends
2019-10-04 15:36:12 +02:00
parent edb599ae0b
commit 8bc4081b03
28 changed files with 176 additions and 71 deletions
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2
R/ab_property.R
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@ -188,7 +188,7 @@ ab_validate <- function(x, property, ...) {
error = function(e) stop(e$message, call. = FALSE))
if (!all(x %in% AMR::antibiotics[, property])) {
x <- data.frame(ab = AMR::as.ab(x), stringsAsFactors = FALSE) %>%
x <- data.frame(ab = AMR::as.ab(x, ...), stringsAsFactors = FALSE) %>%
left_join(AMR::antibiotics, by = "ab") %>%
pull(property)
}