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(v0.7.1.9092) as.ab() improvements

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dr. M.S. (Matthijs) Berends
2019-10-04 15:36:12 +02:00
parent edb599ae0b
commit 8bc4081b03
28 changed files with 176 additions and 71 deletions
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4
man/as.ab.Rd
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@ -5,12 +5,14 @@
\alias{is.ab}
\title{Transform to antibiotic ID}
\usage{
as.ab(x)
as.ab(x, ...)
is.ab(x)
}
\arguments{
\item{x}{character vector to determine to antibiotic ID}
\item{...}{arguments passed on to internal functions}
}
\value{
Character (vector) with class \code{"ab"}. Unknown values will return \code{NA}.

2
man/portion.Rd
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@ -44,7 +44,7 @@ rsi_df(data, translate_ab = "name", language = get_locale(),
\item{minimum}{the minimum allowed number of available (tested) isolates. Any isolate count lower than \code{minimum} will return \code{NA} with a warning. The default number of \code{30} isolates is advised by the Clinical and Laboratory Standards Institute (CLSI) as best practice, see Source.}
\item{as_percent}{a logical to indicate whether the output must be returned as a hundred fold with \% sign (a character) using\code{\link[clean]{percentage}}. A value of \code{0.123456} will then be returned as \code{"12.3\%"}.}
\item{as_percent}{a logical to indicate whether the output must be returned as a hundred fold with \% sign (a character). A value of \code{0.123456} will then be returned as \code{"12.3\%"}.}
\item{only_all_tested}{(for combination therapies, i.e. using more than one variable for \code{...}) a logical to indicate that isolates must be tested for all antibiotics, see section \emph{Combination therapy} below}