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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.0.9001</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.0.9002</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -193,7 +193,7 @@
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.svg" class="logo" alt=""><h1>Data sets for download / own use</h1>
<h4 data-toc-skip class="date">20 July 2023</h4>
<h4 data-toc-skip class="date">20 October 2023</h4>
<small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/HEAD/vignettes/datasets.Rmd" class="external-link"><code>vignettes/datasets.Rmd</code></a></small>
<div class="d-none name"><code>datasets.Rmd</code></div>
@ -532,33 +532,33 @@ column names:<br><em>ab</em>, <em>cid</em>, <em>name</em>, <em>group</em>, <em>a
<em>iv_ddd</em>, <em>iv_units</em>, and <em>loinc</em>.</p>
<p>This data set is in R available as <code>antibiotics</code>, after
you load the <code>AMR</code> package.</p>
<p>It was last updated on 22 February 2023 13:38:57 UTC. Find more info
<p>It was last updated on 20 October 2023 12:51:48 UTC. Find more info
about the structure of this data set <a href="https://msberends.github.io/AMR/reference/antibiotics.html">here</a>.</p>
<p><strong>Direct download links:</strong></p>
<ul>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antibiotics.rds" class="external-link">original
R Data Structure (RDS) file</a> (39 kB)<br>
R Data Structure (RDS) file</a> (44 kB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antibiotics.txt" class="external-link">tab-separated
text file</a> (0.1 MB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antibiotics.xlsx" class="external-link">Microsoft
Excel workbook</a> (66 kB)<br>
Excel workbook</a> (72 kB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antibiotics.feather" class="external-link">Apache
Feather file</a> (0.1 MB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antibiotics.parquet" class="external-link">Apache
Parquet file</a> (97 kB)<br>
Parquet file</a> (0.1 MB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antibiotics.xpt" class="external-link">SAS
transport (XPT) file</a> (1.4 MB)<br>
transport (XPT) file</a> (1.5 MB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antibiotics.sav" class="external-link">IBM
SPSS Statistics data file</a> (0.3 MB)<br>
SPSS Statistics data file</a> (0.4 MB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antibiotics.dta" class="external-link">Stata
DTA file</a> (0.4 MB)</li>
DTA file</a> (0.5 MB)</li>
</ul>
<p>The tab-separated text file and Microsoft Excel workbook, and SAS,
SPSS and Stata files all contain the ATC codes, common abbreviations,
@ -586,14 +586,14 @@ Names and Codes)</a></li>
<div class="section level3">
<h3 id="example-content-1">Example content<a class="anchor" aria-label="anchor" href="#example-content-1"></a>
</h3>
<table style="width:100%;" class="table">
<table class="table">
<colgroup>
<col width="1%">
<col width="2%">
<col width="8%">
<col width="7%">
<col width="7%">
<col width="13%">
<col width="12%">
<col width="17%">
<col width="6%">
<col width="13%">
@ -634,7 +634,7 @@ Names and Codes)</a></li>
<td align="center"></td>
<td align="center">1.0</td>
<td align="center">g</td>
<td align="center">13546-7, 15098-7, 17798-0, …</td>
<td align="center">101493-5, 11-7, 12-5, …</td>
</tr>
<tr class="even">
<td align="center">AMX</td>
@ -650,7 +650,7 @@ Names and Codes)</a></li>
<td align="center">g</td>
<td align="center">3.0</td>
<td align="center">g</td>
<td align="center">16365-9, 25274-2, 3344-9, …</td>
<td align="center">101498-4, 15-8, 16-6, …</td>
</tr>
<tr class="odd">
<td align="center">AMC</td>
@ -683,7 +683,7 @@ inhibitors</td>
<td align="center">g</td>
<td align="center">6.0</td>
<td align="center">g</td>
<td align="center">21066-6, 3355-5, 33562-0, …</td>
<td align="center">101477-8, 101478-6, 18864-9, …</td>
</tr>
<tr class="odd">
<td align="center">AZM</td>
@ -699,7 +699,7 @@ inhibitors</td>
<td align="center">g</td>
<td align="center">0.5</td>
<td align="center">g</td>
<td align="center">16420-2, 25233-8</td>
<td align="center">100043-9, 16420-2, 16421-0, …</td>
</tr>
<tr class="even">
<td align="center">PEN</td>
@ -732,33 +732,33 @@ column names:<br><em>av</em>, <em>name</em>, <em>atc</em>, <em>cid</em>,
<em>loinc</em>.</p>
<p>This data set is in R available as <code>antivirals</code>, after you
load the <code>AMR</code> package.</p>
<p>It was last updated on 13 November 2022 07:46:10 UTC. Find more info
<p>It was last updated on 20 October 2023 12:51:48 UTC. Find more info
about the structure of this data set <a href="https://msberends.github.io/AMR/reference/antibiotics.html">here</a>.</p>
<p><strong>Direct download links:</strong></p>
<ul>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antivirals.rds" class="external-link">original
R Data Structure (RDS) file</a> (5 kB)<br>
R Data Structure (RDS) file</a> (6 kB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antivirals.txt" class="external-link">tab-separated
text file</a> (16 kB)<br>
text file</a> (17 kB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antivirals.xlsx" class="external-link">Microsoft
Excel workbook</a> (16 kB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antivirals.feather" class="external-link">Apache
Feather file</a> (15 kB)<br>
Feather file</a> (16 kB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antivirals.parquet" class="external-link">Apache
Parquet file</a> (13 kB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antivirals.xpt" class="external-link">SAS
transport (XPT) file</a> (68 kB)<br>
transport (XPT) file</a> (73 kB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antivirals.sav" class="external-link">IBM
SPSS Statistics data file</a> (30 kB)<br>
SPSS Statistics data file</a> (32 kB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antivirals.dta" class="external-link">Stata
DTA file</a> (73 kB)</li>
DTA file</a> (78 kB)</li>
</ul>
<p>The tab-separated text file and Microsoft Excel workbook, and SAS,
SPSS and Stata files all contain the trade names and LOINC codes as
@ -825,7 +825,7 @@ inhibitors</td>
<td align="center">g</td>
<td align="center"></td>
<td align="center"></td>
<td align="center">29113-8, 78772-1, 78773-9, …</td>
<td align="center">29113-8, 30273-7, 30287-7, …</td>
</tr>
<tr class="even">
<td align="center">ACI</td>
@ -880,7 +880,7 @@ inhibitors</td>
<td align="center">g</td>
<td align="center"></td>
<td align="center"></td>
<td align="center">29114-6, 31028-4, 78791-1</td>
<td align="center">29114-6, 30296-8, 30297-6, …</td>
</tr>
<tr class="even">
<td align="center">ASU</td>