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unit tests

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2023-02-18 14:56:06 +01:00
parent 8dcf101a9c
commit 8d902410f9
33 changed files with 73 additions and 71 deletions
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4
inst/tinytest/test-resistance_predict.R
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@ -27,7 +27,7 @@
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
if (AMR:::pkg_is_available("dplyr", min_version = "1.0.0")) {
if (AMR:::pkg_is_available("dplyr", min_version = "1.0.0", also_load = TRUE)) {
expect_stdout(AMX_R <- example_isolates %>%
filter(mo == "B_ESCHR_COLI") %>%
sir_predict(
@ -52,7 +52,7 @@ pdf(NULL) # prevent Rplots.pdf being created
expect_silent(plot(x))
if (AMR:::pkg_is_available("ggplot2")) {
expect_silent(ggplot_sir_predict(x))
expect_silent(autoplot(x))
expect_silent(ggplot2::autoplot(x))
expect_error(ggplot_sir_predict(example_isolates))
}
expect_stdout(sir_predict(