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updated taxonomy

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dr. M.S. (Matthijs) Berends
2022-12-12 00:14:56 +01:00
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commit 8da2467209
46 changed files with 132944 additions and 57370 deletions
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NEWS.md
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# AMR 1.8.2.9061
# AMR 1.8.2.9062
This version will eventually become v2.0! We're happy to reach a new major milestone soon!
@ -45,6 +45,7 @@ This version will eventually become v2.0! We're happy to reach a new major miles
* Support for using antibiotic selectors in scoped `dplyr` verbs (with or without `vars()`), such as in: `... %>% summarise_at(aminoglycosides(), resistance)`, see `resistance()`
### Changes
* Updated the microbiological taxonomy using the latest GBIF backbone (November 2022) and latest LPSN records (11 December 2022)
* For `as.rsi()`:
* Fixed certain EUCAST breakpoints for MIC values
* Allow `NA` values (e.g. `as.rsi(as.disk(NA), ...)`)