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(v3.0.0.9007) allow any tidyselect language in as.sir()

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dr. M.S. (Matthijs) Berends
2025-07-17 14:29:35 +02:00
parent 0138e33ce9
commit 8dab0a3730
16 changed files with 123 additions and 113 deletions
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R/ab.R
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@ -184,7 +184,8 @@ as.ab <- function(x, flag_multiple_results = TRUE, language = get_AMR_locale(),
x_new[known_codes_cid] <- AMR_env$AB_lookup$ab[match(x[known_codes_cid], AMR_env$AB_lookup$cid)]
previously_coerced <- x %in% AMR_env$ab_previously_coerced$x
x_new[previously_coerced & is.na(x_new)] <- AMR_env$ab_previously_coerced$ab[match(x[is.na(x_new) & x %in% AMR_env$ab_previously_coerced$x], AMR_env$ab_previously_coerced$x)]
if (any(previously_coerced) && isTRUE(info) && message_not_thrown_before("as.ab", entire_session = TRUE)) {
previously_coerced_mention <- x %in% AMR_env$ab_previously_coerced$x & !x %in% AMR_env$AB_lookup$ab & !x %in% AMR_env$AB_lookup$generalised_name
if (any(previously_coerced_mention) && isTRUE(info) && message_not_thrown_before("as.ab", entire_session = TRUE)) {
message_(
"Returning previously coerced ",
ifelse(length(unique(which(x[which(previously_coerced)] %in% x_bak_clean))) > 1, "value for an antimicrobial", "values for various antimicrobials"),