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(v3.0.0.9007) allow any tidyselect language in as.sir()

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dr. M.S. (Matthijs) Berends
2025-07-17 14:29:35 +02:00
parent 0138e33ce9
commit 8dab0a3730
16 changed files with 123 additions and 113 deletions
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R/mean_amr_distance.R
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@ -31,7 +31,7 @@
#'
#' Calculates a normalised mean for antimicrobial resistance between multiple observations, to help to identify similar isolates without comparing antibiograms by hand.
#' @param x A vector of class [sir][as.sir()], [mic][as.mic()] or [disk][as.disk()], or a [data.frame] containing columns of any of these classes.
#' @param ... Variables to select. Supports [tidyselect language][tidyselect::language] (such as `column1:column4` and `where(is.mic)`), and can thus also be [antimicrobial selectors][amr_selector()].
#' @param ... Variables to select. Supports [tidyselect language][tidyselect::starts_with()] such as `where(is.mic)`, `starts_with(...)`, or `column1:column4`, and can thus also be [antimicrobial selectors][amr_selector()].
#' @param combine_SI A [logical] to indicate whether all values of S, SDD, and I must be merged into one, so the input only consists of S+I vs. R (susceptible vs. resistant) - the default is `TRUE`.
#' @details The mean AMR distance is effectively [the Z-score](https://en.wikipedia.org/wiki/Standard_score); a normalised numeric value to compare AMR test results which can help to identify similar isolates, without comparing antibiograms by hand.
#'