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dr. M.S. (Matthijs) Berends
2019-01-15 16:38:54 +01:00
parent 046d195064
commit 8db87a15e9
8 changed files with 208 additions and 53 deletions
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R/resistance_predict.R
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@ -34,6 +34,7 @@
#' @param I_as_R a logical to indicate whether values \code{I} should be treated as \code{R}
#' @param preserve_measurements a logical to indicate whether predictions of years that are actually available in the data should be overwritten by the original data. The standard errors of those years will be \code{NA}.
#' @param info a logical to indicate whether textual analysis should be printed with the name and \code{\link{summary}} of the statistical model.
#' @param main title of the plot
#' @return \code{data.frame} with extra class \code{"resistance_predict"} with columns:
#' \itemize{
#' \item{\code{year}}
@ -48,7 +49,7 @@
#' @rdname resistance_predict
#' @export
#' @importFrom stats predict glm lm
#' @importFrom dplyr %>% pull mutate mutate_at n group_by_at summarise filter filter_at all_vars n_distinct arrange case_when n_groups
#' @importFrom dplyr %>% pull mutate mutate_at n group_by_at summarise filter filter_at all_vars n_distinct arrange case_when n_groups transmute
#' @inheritSection AMR Read more on our website!
#' @examples
#' x <- resistance_predict(septic_patients, col_ab = "amox", year_min = 2010)