P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-09 00:02:38 +02:00
Code Releases Activity

(v0.6.1.9052) website update

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2019-06-01 21:28:18 +02:00
parent 5608b27c7c
commit 8de0495008
72 changed files with 376 additions and 351 deletions
Download Patch File Download Diff File Expand all files Collapse all files

18
docs/news/index.html
View File

@ -78,7 +78,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9051</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">0.6.1.9052</span>
</span>
</div>
@ -239,9 +239,9 @@
</div>
<div id="amr-06190xx" class="section level1">
<div id="amr-0619052" class="section level1">
<h1 class="page-header">
<a href="#amr-06190xx" class="anchor"></a>AMR 0.6.1.90xx<small> Unreleased </small>
<a href="#amr-0619052" class="anchor"></a>AMR 0.6.1.9052<small> Unreleased </small>
</h1>
<p><strong>Note: latest development version</strong></p>
<div id="new" class="section level4">
@ -272,7 +272,9 @@
<li>All references to antibiotics in our package now use EARS-Net codes, like <code>AMX</code> for amoxicillin</li>
<li>Functions <code>atc_certe</code>, <code>ab_umcg</code> and <code>atc_trivial_nl</code> have been removed</li>
<li>All <code>atc_*</code> functions are superceded by <code>ab_*</code> functions</li>
<li>All output will be translated by using an included translation file which <a href="https://gitlab.com/msberends/AMR/blob/master/data-raw/translations.tsv">can be viewed here</a> Please <a href="https://gitlab.com/msberends/AMR/issues/new?issue%5Btitle%5D=Translation%20suggestion">create an issue in one of our repositories</a> if you want additions in this file.</li>
<li>
<p>All output will be translated by using an included translation file which <a href="https://gitlab.com/msberends/AMR/blob/master/data-raw/translations.tsv">can be viewed here</a>.</p>
Please <a href="https://gitlab.com/msberends/AMR/issues/new?issue%5Btitle%5D=Translation%20suggestion">create an issue in one of our repositories</a> if you want additions in this file.</li>
</ul>
</li>
<li>Improvements to plotting AMR results with <code><a href="../reference/ggplot_rsi.html">ggplot_rsi()</a></code>:
@ -305,7 +307,9 @@
</li>
</ul>
</li>
<li>Removed all hardcoded EUCAST rules and replaced them with a new reference file which <a href="https://gitlab.com/msberends/AMR/blob/master/data-raw/eucast_rules.tsv">can be viewed here</a> Please <a href="https://gitlab.com/msberends/AMR/issues/new?issue%5Btitle%5D=EUCAST%20edit">create an issue in one of our repositories</a> if you want changes in this file.</li>
<li>
<p>Removed all hardcoded EUCAST rules and replaced them with a new reference file which <a href="https://gitlab.com/msberends/AMR/blob/master/data-raw/eucast_rules.tsv">can be viewed here</a>.</p>
Please <a href="https://gitlab.com/msberends/AMR/issues/new?issue%5Btitle%5D=EUCAST%20edit">create an issue in one of our repositories</a> if you want changes in this file.</li>
<li>Added ceftazidim intrinsic resistance to <em>Streptococci</em>
</li>
<li>Changed default settings for <code><a href="../reference/age_groups.html">age_groups()</a></code>, to let groups of fives and tens end with 100+ instead of 120+</li>
@ -318,7 +322,7 @@
<li>Small algorithm fix for <code><a href="../reference/as.mo.html">as.mo()</a></code>
</li>
<li>Removed viruses from data set <code>microorganisms.codes</code> and cleaned it up</li>
<li>Fix for <code><a href="../reference/mo_property.html">mo_shortname()</a></code> where species would not be determined correctly</li>
<li><p>Fix for <code><a href="../reference/mo_property.html">mo_shortname()</a></code> where species would not be determined correctly</p></li>
</ul>
</div>
<div id="other" class="section level4">
@ -1061,7 +1065,7 @@ Using <code><a href="../reference/as.mo.html">as.mo(..., allow_uncertain = 3)</a
<div id="tocnav">
<h2>Contents</h2>
<ul class="nav nav-pills nav-stacked">
<li><a href="#amr-06190xx">0.6.1.90</a></li>
<li><a href="#amr-0619052">0.6.1.9052</a></li>
<li><a href="#amr-061">0.6.1</a></li>
<li><a href="#amr-060">0.6.0</a></li>
<li><a href="#amr-050">0.5.0</a></li>