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Code Releases Activity

AI improvements

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dr. M.S. (Matthijs) Berends
2018-12-07 12:04:55 +01:00
parent 87ad6da745
commit 8e8a9cd190
19 changed files with 199 additions and 140 deletions
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NEWS.md
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@@ -2,14 +2,20 @@
#### New
* Function `mo_failures` to review values that could not be coerced to a valid MO code, using `as.mo`. This latter function will now only show a maximum of 25 uncoerced values.
* Function `mo_renamed` to get a list of all returned values from `as.mo` that have had taxonomic renaming
#### Changed
* Improvements for `as.mo`:
* Finds better results when input is in other languages
* Better handling for subspecies
* Better handling for *Salmonellae*
* There will be looked for uncertain results at default - these results will be returned with a informative warning
* Extended manual text about algorithms
* Function `first_isolate` will now use a column named like "patid" for the patient ID, when this parameter was left blank
* Reduce false positives for `is.rsi.eligible`
* Summaries of class `mo` will now return the top 3 and the unique count, e.g. using `summary(mo)`
* Small text updates to summaries of class `rsi` and `mic`
* Function `as.mo` now prints a progress bar when it takes more than 3 seconds the get results
# 0.5.0 (latest stable release)