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AI improvements

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2018-12-07 12:04:55 +01:00
parent 87ad6da745
commit 8e8a9cd190
19 changed files with 199 additions and 140 deletions
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4
tests/testthat/test-mo.R
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@ -214,10 +214,10 @@ test_that("as.mo works", {
expect_equal(as.character(suppressWarnings(as.mo(
c("Microbacterium paraoxidans",
"Streptococcus suis (bovis gr)",
"Raoultella (here some text) terrigena"), allow_uncertain = TRUE))),
"Raoultella (here some text) terrigena")))),
c("B_MCRBC", "B_STRPTC_SUI", "B_RLTLL_TER"))
# Salmonella (City) are all actually Salmonella enterica spp (City)
expect_equal(as.character(suppressMessages(as.mo("Salmonella Goettingen", allow_uncertain = TRUE))),
expect_equal(as.character(suppressMessages(as.mo("Salmonella Goettingen"))),
"B_SLMNL_ENT")
})