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(v0.7.0.9005) ab algorithm update

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dr. M.S. (Matthijs) Berends
2019-06-11 14:18:25 +02:00
parent f6c47c8c88
commit 8f674e19bb
36 changed files with 274 additions and 248 deletions
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11
man/mo_property.Rd
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@@ -20,6 +20,7 @@
\alias{mo_year}
\alias{mo_rank}
\alias{mo_taxonomy}
\alias{mo_info}
\alias{mo_url}
\title{Property of a microorganism}
\usage{
@@ -59,6 +60,8 @@ mo_rank(x, ...)
mo_taxonomy(x, language = get_locale(), ...)
mo_info(x, language = get_locale(), ...)
mo_url(x, open = FALSE, ...)
mo_property(x, property = "fullname", language = get_locale(), ...)
@@ -140,8 +143,8 @@ mo_fullname("E. coli") # "Escherichia coli", same as mo_name()
mo_shortname("E. coli") # "E. coli"
## other properties
mo_gramstain("E. coli") # "Gram negative"
mo_type("E. coli") # "Bacteria" (equal to kingdom)
mo_gramstain("E. coli") # "Gram-negative"
mo_type("E. coli") # "Bacteria" (equal to kingdom, but may be translated)
mo_rank("E. coli") # "species"
mo_url("E. coli") # get the direct url to the online database entry
@@ -155,7 +158,7 @@ mo_year("E. coli") # 1919
mo_genus("MRSA") # "Staphylococcus"
mo_species("MRSA") # "aureus"
mo_shortname("MRSA") # "S. aureus"
mo_gramstain("MRSA") # "Gram positive"
mo_gramstain("MRSA") # "Gram-positive"
mo_genus("VISA") # "Staphylococcus"
mo_species("VISA") # "aureus"
@@ -204,6 +207,8 @@ mo_fullname("S. pyogenes",
# get a list with the complete taxonomy (from kingdom to subspecies)
mo_taxonomy("E. coli")
# get a list with the taxonomy, the authors and the URL to the online database
mo_info("E. coli")
}
\seealso{
\code{\link{microorganisms}}