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(v1.4.0.9006) bugfix

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dr. M.S. (Matthijs) Berends
2020-10-21 14:40:00 +02:00
parent 9109b9dd62
commit 8f868388ce
13 changed files with 19 additions and 19 deletions
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2
R/ggplot_rsi.R
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@ -371,7 +371,7 @@ scale_rsi_colours <- function(colours = c(S = "#61a8ff",
IR = "#ff6961",
R = "#ff6961")) {
stop_ifnot_installed("ggplot2")
meet_criteria(colours, allow_class = "character")
meet_criteria(colours, allow_class = c("character", "logical"))
# previous colour: palette = "RdYlGn"
# previous colours: values = c("#b22222", "#ae9c20", "#7cfc00")

8
R/like.R
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@ -69,7 +69,7 @@
#' }
like <- function(x, pattern, ignore.case = TRUE) {
meet_criteria(x, allow_NA = TRUE)
meet_criteria(pattern, allow_class = "character")
meet_criteria(pattern, allow_NA = FALSE)
meet_criteria(ignore.case, allow_class = "logical", has_length = 1)
# set to fixed if no regex found
@ -154,15 +154,15 @@ like <- function(x, pattern, ignore.case = TRUE) {
#' @export
"%like_case%" <- function(x, pattern) {
meet_criteria(x, allow_NA = TRUE)
meet_criteria(pattern, allow_class = "character")
meet_criteria(pattern, allow_NA = FALSE)
like(x, pattern, ignore.case = FALSE)
}
# don't export his one, it's just for convenience in eucast_rules()
# match all Klebsiella and Raoultella, but not K. aerogenes: fullname %like_perl% "^(Klebsiella(?! aerogenes)|Raoultella)"
"%like_perl%" <- function(x, pattern) {
meet_criteria(x)
meet_criteria(pattern, allow_class = "character")
meet_criteria(x, allow_NA = TRUE)
meet_criteria(pattern, allow_NA = FALSE)
grepl(x = tolower(x),
pattern = tolower(pattern),
perl = TRUE,