P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2026-04-28 13:43:56 +02:00
Code Releases Activity

Add add_if_missing parameter to control NA handling in interpretive rules (#264)

Browse Source
This commit is contained in:
Matthijs Berends
2026-04-21 21:53:43 +02:00
committed by GitHub
parent fb8758f36b
commit 8ff5d4472a
46 changed files with 1232 additions and 1016 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
R/mo_property.R
View File

@@ -31,7 +31,7 @@
#'
#' Use these functions to return a specific property of a microorganism based on the latest accepted taxonomy. All input values will be evaluated internally with [as.mo()], which makes it possible to use microbial abbreviations, codes and names as input. See *Examples*.
#' @param x Any [character] (vector) that can be coerced to a valid microorganism code with [as.mo()]. Can be left blank for auto-guessing the column containing microorganism codes if used in a data set, see *Examples*.
#' @param property One of the column names of the [microorganisms] data set: `r vector_or(colnames(microorganisms), sort = FALSE, quotes = TRUE)`, or must be `"shortname"`.
#' @param property One of the column names of the [microorganisms] data set: `r vector_or(colnames(microorganisms), sort = FALSE, documentation = TRUE)`, or must be `"shortname"`.
#' @inheritParams as.mo
#' @param ... Other arguments passed on to [as.mo()], such as 'minimum_matching_score', 'ignore_pattern', and 'remove_from_input'.
#' @param ab Any (vector of) text that can be coerced to a valid antibiotic drug code with [as.ab()].