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Add add_if_missing parameter to control NA handling in interpretive rules (#264)

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Matthijs Berends
2026-04-21 21:53:43 +02:00
committed by GitHub
parent fb8758f36b
commit 8ff5d4472a
46 changed files with 1232 additions and 1016 deletions
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4
data-raw/loinc.R
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@@ -31,7 +31,7 @@
# Steps to reproduce:
# 1. Create a fake account at https://loinc.org (sad you have to create one...)
# 2. Download the CSV from https://loinc.org/download/loinc-complete/
# 2. Download the CSV from https://loinc.org/download/loinc-complete/
# 3. Read file LoincTable/Loinc.csv
loinc_df <- read.csv("data-raw/Loinc.csv",
row.names = NULL,
@@ -47,7 +47,7 @@ loinc_df %>%
filter(COMPONENT %like% "ampicillin|fluconazol|meropenem") %>%
count(CLASS, sort = TRUE)
loinc_df <- loinc_df %>%
filter(CLASS %in% c("DRUG/TOX", "ABXBACT")) %>%
filter(CLASS %in% c("DRUG/TOX", "ABXBACT")) %>%
mutate(name = generalise_antibiotic_name(COMPONENT), .before = 1)
# antimicrobials