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Add add_if_missing parameter to control NA handling in interpretive rules (#264)

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Matthijs Berends
2026-04-21 21:53:43 +02:00
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parent fb8758f36b
commit 8ff5d4472a
46 changed files with 1232 additions and 1016 deletions
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man/dosage.Rd
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@@ -9,10 +9,10 @@ A \link[tibble:tibble]{tibble} with 759 observations and 9 variables:
\itemize{
\item \code{ab}\cr Antimicrobial ID as used in this package (such as \code{AMC}), using the official EARS-Net (European Antimicrobial Resistance Surveillance Network) codes where available
\item \code{name}\cr Official name of the antimicrobial drug as used by WHONET/EARS-Net or the WHO
\item \code{type}\cr Type of the dosage, either {.val high_dosage}, {.val standard_dosage}, or {.val uncomplicated_uti}
\item \code{type}\cr Type of the dosage, either \code{"high_dosage"}, \code{"standard_dosage"}, or \code{"uncomplicated_uti"}
\item \code{dose}\cr Dose, such as "2 g" or "25 mg/kg"
\item \code{dose_times}\cr Number of times a dose must be administered
\item \code{administration}\cr Route of administration, either {.val }, {.val im}, {.val iv}, {.val oral}, or NA
\item \code{administration}\cr Route of administration, either \code{""}, \code{"im"}, \code{"iv"}, \code{"oral"}, or NA
\item \code{notes}\cr Additional dosage notes
\item \code{original_txt}\cr Original text in the PDF file of EUCAST
\item \code{eucast_version}\cr Version number of the EUCAST Clinical Breakpoints guideline to which these dosages apply, either 15, 14, 13.1, 12, or 11