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Add add_if_missing parameter to control NA handling in interpretive rules (#264)

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Matthijs Berends
2026-04-21 21:53:43 +02:00
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parent fb8758f36b
commit 8ff5d4472a
46 changed files with 1232 additions and 1016 deletions
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man/example_isolates.Rd
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@@ -10,8 +10,8 @@ A \link[tibble:tibble]{tibble} with 2 000 observations and 46 variables:
\item \code{date}\cr Date of receipt at the laboratory
\item \code{patient}\cr ID of the patient
\item \code{age}\cr Age of the patient
\item \code{gender}\cr Gender of the patient, either {.val F} or {.val M}
\item \code{ward}\cr Ward type where the patient was admitted, either {.val Clinical}, {.val ICU}, or {.val Outpatient}
\item \code{gender}\cr Gender of the patient, either \code{"F"} or \code{"M"}
\item \code{ward}\cr Ward type where the patient was admitted, either \code{"Clinical"}, \code{"ICU"}, or \code{"Outpatient"}
\item \code{mo}\cr ID of microorganism created with \code{\link[=as.mo]{as.mo()}}, see also the \link{microorganisms} data set
\item \code{PEN:RIF}\cr 40 different antimicrobials with class \code{\link{sir}} (see \code{\link[=as.sir]{as.sir()}}); these column names occur in the \link{antimicrobials} data set and can be translated with \code{\link[=set_ab_names]{set_ab_names()}} or \code{\link[=ab_name]{ab_name()}}
}