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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -370,18 +370,18 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 S S R R R R</span></span>
<span><span class="co"># 2 R I S R S S</span></span>
<span><span class="co"># 3 R I R S R I</span></span>
<span><span class="co"># 4 I R S I R I</span></span>
<span><span class="co"># 5 S S S R S S</span></span>
<span><span class="co"># 6 S I I R S I</span></span>
<span><span class="co"># 1 S S R S R I</span></span>
<span><span class="co"># 2 R R R I R R</span></span>
<span><span class="co"># 3 S S S S S R</span></span>
<span><span class="co"># 4 R R I R R I</span></span>
<span><span class="co"># 5 S R I S S S</span></span>
<span><span class="co"># 6 S I S S S I</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 R</span></span>
<span><span class="co"># 2 R</span></span>
<span><span class="co"># 1 I</span></span>
<span><span class="co"># 2 I</span></span>
<span><span class="co"># 3 I</span></span>
<span><span class="co"># 4 I</span></span>
<span><span class="co"># 5 I</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 6 R</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
@ -423,40 +423,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3215</td>
<td align="right">64.30%</td>
<td align="right">3215</td>
<td align="right">64.30%</td>
<td align="right">3245</td>
<td align="right">64.90%</td>
<td align="right">3245</td>
<td align="right">64.90%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">1001</td>
<td align="right">20.02%</td>
<td align="right">4216</td>
<td align="right">84.32%</td>
<td align="right">989</td>
<td align="right">19.78%</td>
<td align="right">4234</td>
<td align="right">84.68%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">435</td>
<td align="right">8.70%</td>
<td align="right">4651</td>
<td align="right">93.02%</td>
<td align="right">415</td>
<td align="right">8.30%</td>
<td align="right">4649</td>
<td align="right">92.98%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">251</td>
<td align="right">5.02%</td>
<td align="right">4902</td>
<td align="right">98.04%</td>
<td align="right">247</td>
<td align="right">4.94%</td>
<td align="right">4896</td>
<td align="right">97.92%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">98</td>
<td align="right">1.96%</td>
<td align="right">104</td>
<td align="right">2.08%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>