P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-12 01:42:08 +02:00
Code Releases Activity

(v0.7.1.9027) tibble printing

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2019-08-07 15:37:39 +02:00
parent 14c47da656
commit 90c874025a
42 changed files with 946 additions and 602 deletions
Download Patch File Download Diff File Expand all files Collapse all files

12
man/resistance_predict.Rd
View File

@ -8,14 +8,12 @@
\title{Predict antimicrobial resistance}
\usage{
resistance_predict(x, col_ab, col_date = NULL, year_min = NULL,
year_max = NULL, year_every = 1, minimum = 30,
model = "binomial", I_as_S = TRUE, preserve_measurements = TRUE,
info = TRUE, ...)
year_max = NULL, year_every = 1, minimum = 30, model = NULL,
I_as_S = TRUE, preserve_measurements = TRUE, info = TRUE, ...)
rsi_predict(x, col_ab, col_date = NULL, year_min = NULL,
year_max = NULL, year_every = 1, minimum = 30,
model = "binomial", I_as_S = TRUE, preserve_measurements = TRUE,
info = TRUE, ...)
year_max = NULL, year_every = 1, minimum = 30, model = NULL,
I_as_S = TRUE, preserve_measurements = TRUE, info = TRUE, ...)
\method{plot}{resistance_predict}(x,
main = paste("Resistance Prediction of", x_name), ...)
@ -38,7 +36,7 @@ ggplot_rsi_predict(x, main = paste("Resistance Prediction of", x_name),
\item{minimum}{minimal amount of available isolates per year to include. Years containing less observations will be estimated by the model.}
\item{model}{the statistical model of choice. Defaults to a generalised linear regression model with binomial distribution (i.e. using \code{\link{glm}(..., family = \link{binomial})}), assuming that a period of zero resistance was followed by a period of increasing resistance leading slowly to more and more resistance. See Details for valid options.}
\item{model}{the statistical model of choice. This could be a generalised linear regression model with binomial distribution (i.e. using \code{\link{glm}(..., family = \link{binomial})}), assuming that a period of zero resistance was followed by a period of increasing resistance leading slowly to more and more resistance. See Details for all valid options.}
\item{I_as_S}{a logical to indicate whether values \code{I} should be treated as \code{S} (will otherwise be treated as \code{R})}