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(v1.4.0.9005) bugfix
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Package: AMR
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Version: 1.4.0.9004
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Version: 1.4.0.9005
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Date: 2020-10-21
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Title: Antimicrobial Resistance Analysis
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Authors@R: c(
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2
NEWS.md
2
NEWS.md
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# AMR 1.4.0.9004
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# AMR 1.4.0.9005
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## <small>Last updated: 21 October 2020</small>
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### New
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@ -162,7 +162,7 @@ ggplot_rsi <- function(data,
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R = "#ff6961"),
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datalabels = TRUE,
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datalabels.size = 2.5,
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datalabels.colour = "gray15",
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datalabels.colour = "grey15",
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title = NULL,
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subtitle = NULL,
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caption = NULL,
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@ -184,7 +184,7 @@ ggplot_rsi <- function(data,
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meet_criteria(minimum, allow_class = c("numeric", "integer"), has_length = 1)
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meet_criteria(language, has_length = 1, is_in = c(LANGUAGES_SUPPORTED, ""), allow_NULL = TRUE, allow_NA = TRUE)
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meet_criteria(nrow, allow_class = c("numeric", "integer"), has_length = 1, allow_NULL = TRUE)
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meet_criteria(colours, allow_class = "character")
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meet_criteria(colours, allow_class = c("character", "logical"))
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meet_criteria(datalabels, allow_class = "logical", has_length = 1)
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meet_criteria(datalabels.size, allow_class = c("numeric", "integer"), has_length = 1)
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meet_criteria(datalabels.colour, allow_class = "character", has_length = 1)
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@ -226,8 +226,8 @@ ggplot_rsi <- function(data,
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if (fill == "interpretation") {
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# set RSI colours
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if (isFALSE(colours) & missing(datalabels.colour)) {
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# set datalabel colour to middle gray
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datalabels.colour <- "gray50"
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# set datalabel colour to middle grey
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datalabels.colour <- "grey50"
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}
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p <- p + scale_rsi_colours(colours = colours)
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}
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@ -410,7 +410,7 @@ labels_rsi_count <- function(position = NULL,
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combine_SI = TRUE,
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combine_IR = FALSE,
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datalabels.size = 3,
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datalabels.colour = "gray15") {
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datalabels.colour = "grey15") {
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stop_ifnot_installed("ggplot2")
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meet_criteria(position, allow_class = "character", has_length = 1, is_in = c("fill", "stack", "dodge"), allow_NULL = TRUE)
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meet_criteria(x, allow_class = "character", has_length = 1)
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@ -81,7 +81,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="https://msberends.github.io/AMR//index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9004</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9005</span>
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</span>
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</div>
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@ -81,7 +81,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9004</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9005</span>
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</span>
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</div>
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@ -81,7 +81,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="../index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9004</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9005</span>
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</span>
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</div>
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@ -81,7 +81,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9004</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9005</span>
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</span>
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</div>
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@ -43,7 +43,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9004</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9005</span>
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</span>
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</div>
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@ -81,7 +81,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="../index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9004</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9005</span>
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</span>
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</div>
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@ -236,9 +236,9 @@
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<small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
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</div>
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<div id="amr-1409004" class="section level1">
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<h1 class="page-header" data-toc-text="1.4.0.9004">
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<a href="#amr-1409004" class="anchor"></a>AMR 1.4.0.9004<small> Unreleased </small>
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<div id="amr-1409005" class="section level1">
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<h1 class="page-header" data-toc-text="1.4.0.9005">
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<a href="#amr-1409005" class="anchor"></a>AMR 1.4.0.9005<small> Unreleased </small>
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</h1>
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<div id="last-updated-21-october-2020" class="section level2">
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<h2 class="hasAnchor">
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@ -12,7 +12,7 @@ articles:
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datasets: datasets.html
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resistance_predict: resistance_predict.html
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welcome_to_AMR: welcome_to_AMR.html
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last_built: 2020-10-21T09:40Z
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last_built: 2020-10-21T11:05Z
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urls:
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reference: https://msberends.github.io/AMR//reference
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article: https://msberends.github.io/AMR//articles
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@ -82,7 +82,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="../index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9000</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9005</span>
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</span>
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</div>
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@ -260,7 +260,7 @@
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<span class='st'>"#ff6961"</span><span class='op'>)</span>,
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datalabels <span class='op'>=</span> <span class='cn'>TRUE</span>,
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datalabels.size <span class='op'>=</span> <span class='fl'>2.5</span>,
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datalabels.colour <span class='op'>=</span> <span class='st'>"gray15"</span>,
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datalabels.colour <span class='op'>=</span> <span class='st'>"grey15"</span>,
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title <span class='op'>=</span> <span class='cn'>NULL</span>,
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subtitle <span class='op'>=</span> <span class='cn'>NULL</span>,
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caption <span class='op'>=</span> <span class='cn'>NULL</span>,
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@ -301,7 +301,7 @@
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combine_SI <span class='op'>=</span> <span class='cn'>TRUE</span>,
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combine_IR <span class='op'>=</span> <span class='cn'>FALSE</span>,
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datalabels.size <span class='op'>=</span> <span class='fl'>3</span>,
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datalabels.colour <span class='op'>=</span> <span class='st'>"gray15"</span>
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datalabels.colour <span class='op'>=</span> <span class='st'>"grey15"</span>
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<span class='op'>)</span></pre>
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<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="../index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9004</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9005</span>
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</span>
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</div>
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@ -81,7 +81,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9004</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9005</span>
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</span>
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</div>
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@ -28,7 +28,7 @@ ggplot_rsi(
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"#ff6961"),
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datalabels = TRUE,
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datalabels.size = 2.5,
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datalabels.colour = "gray15",
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datalabels.colour = "grey15",
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title = NULL,
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subtitle = NULL,
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caption = NULL,
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@ -69,7 +69,7 @@ labels_rsi_count(
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combine_SI = TRUE,
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combine_IR = FALSE,
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datalabels.size = 3,
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datalabels.colour = "gray15"
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datalabels.colour = "grey15"
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)
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}
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\arguments{
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