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@ -15,7 +15,7 @@
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@ -38,7 +38,7 @@
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@ -380,19 +380,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 I R R R S R</span></span>
<span><span class="co"># 2 R I R S R S</span></span>
<span><span class="co"># 3 R R R I I R</span></span>
<span><span class="co"># 4 I S R R S I</span></span>
<span><span class="co"># 5 S R R S R R</span></span>
<span><span class="co"># 6 S I R I S R</span></span>
<span><span class="co"># 1 R S I R I I</span></span>
<span><span class="co"># 2 I R R S I I</span></span>
<span><span class="co"># 3 I S R S I R</span></span>
<span><span class="co"># 4 S S R R R I</span></span>
<span><span class="co"># 5 R I R S S I</span></span>
<span><span class="co"># 6 S R S I I I</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 I</span></span>
<span><span class="co"># 2 S</span></span>
<span><span class="co"># 3 R</span></span>
<span><span class="co"># 4 R</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 6 I</span></span></code></pre></div>
<span><span class="co"># 3 I</span></span>
<span><span class="co"># 4 S</span></span>
<span><span class="co"># 5 R</span></span>
<span><span class="co"># 6 S</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -433,40 +433,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3227</td>
<td align="right">64.54%</td>
<td align="right">3227</td>
<td align="right">64.54%</td>
<td align="right">3237</td>
<td align="right">64.74%</td>
<td align="right">3237</td>
<td align="right">64.74%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">976</td>
<td align="right">19.52%</td>
<td align="right">4203</td>
<td align="right">84.06%</td>
<td align="right">975</td>
<td align="right">19.50%</td>
<td align="right">4212</td>
<td align="right">84.24%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">442</td>
<td align="right">8.84%</td>
<td align="right">4645</td>
<td align="right">92.90%</td>
<td align="right">458</td>
<td align="right">9.16%</td>
<td align="right">4670</td>
<td align="right">93.40%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">247</td>
<td align="right">4.94%</td>
<td align="right">4892</td>
<td align="right">97.84%</td>
<td align="right">234</td>
<td align="right">4.68%</td>
<td align="right">4904</td>
<td align="right">98.08%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">108</td>
<td align="right">2.16%</td>
<td align="right">96</td>
<td align="right">1.92%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>