P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-11 21:41:58 +02:00
Code Releases Activity

(v1.7.1.9040) Support for Danish

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2021-09-29 12:12:35 +02:00
parent 5f433d6e5c
commit 93a4734b44
62 changed files with 911 additions and 823 deletions
Download Patch File Download Diff File Expand all files Collapse all files

35
man/ab_property.Rd
View File

@ -3,13 +3,12 @@
\name{ab_property}
\alias{ab_property}
\alias{ab_name}
\alias{set_ab_names}
\alias{ATC}
\alias{ab_cid}
\alias{ab_synonyms}
\alias{ab_tradenames}
\alias{ab_group}
\alias{ab_atc}
\alias{ATC}
\alias{ab_atc_group1}
\alias{ab_atc_group2}
\alias{ab_loinc}
@ -17,17 +16,11 @@
\alias{ab_ddd_units}
\alias{ab_info}
\alias{ab_url}
\alias{set_ab_names}
\title{Get Properties of an Antibiotic}
\usage{
ab_name(x, language = get_locale(), tolower = FALSE, ...)
set_ab_names(
data,
property = "name",
language = get_locale(),
snake_case = property == "name"
)
ab_cid(x, ...)
ab_synonyms(x, ...)
@ -53,6 +46,13 @@ ab_info(x, language = get_locale(), ...)
ab_url(x, open = FALSE, ...)
ab_property(x, property = "name", language = get_locale(), ...)
set_ab_names(
data,
property = "name",
language = get_locale(),
snake_case = NULL
)
}
\arguments{
\item{x}{any (vector of) text that can be coerced to a valid antibiotic code with \code{\link[=as.ab]{as.ab()}}}
@ -63,17 +63,17 @@ ab_property(x, property = "name", language = get_locale(), ...)
\item{...}{other arguments passed on to \code{\link[=as.ab]{as.ab()}}}
\item{data}{a \link{data.frame} of which the columns need to be renamed}
\item{property}{one of the column names of one of the \link{antibiotics} data set: \code{vector_or(colnames(antibiotics), sort = FALSE)}.}
\item{snake_case}{a \link{logical} to indicate whether the names should be in so-called \href{https://en.wikipedia.org/wiki/Snake_case}{snake case}: in lower case and all spaces/slashes replaced with an underscore (\verb{_})}
\item{only_first}{a \link{logical} to indicate whether only the first ATC code must be returned, with giving preference to J0-codes (i.e., the antimicrobial drug group)}
\item{administration}{way of administration, either \code{"oral"} or \code{"iv"}}
\item{open}{browse the URL using \code{\link[utils:browseURL]{utils::browseURL()}}}
\item{property}{one of the column names of one of the \link{antibiotics} data set: \code{vector_or(colnames(antibiotics), sort = FALSE)}.}
\item{data}{a \link{data.frame} of which the columns need to be renamed, or a \link{character} vector of column names}
\item{snake_case}{a \link{logical} to indicate whether the names should be in so-called \href{https://en.wikipedia.org/wiki/Snake_case}{snake case}: in lower case and all spaces/slashes replaced with an underscore (\verb{_})}
}
\value{
\itemize{
@ -167,6 +167,11 @@ colnames(set_ab_names(example_isolates))
if (require("dplyr")) {
example_isolates \%>\%
set_ab_names()
# this does the same:
example_isolates \%>\%
rename_with(set_ab_names)
# set_ab_names() works with any AB property:
example_isolates \%>\%
set_ab_names("atc")