diff --git a/README.md b/README.md index bc9a6530..3cb5684c 100644 --- a/README.md +++ b/README.md @@ -10,6 +10,8 @@ This R package contains functions to make microbiological, epidemiological data AMR can also be predicted for the forthcoming years with the `rsi_predict` function. For use with the `dplyr` package, the `rsi` function can be used in conjunction with `summarise` to calculate the resistance percentages of different antibiotic columns of a table. +It also contains functions to translate antibiotic codes from the lab (like `"AMOX"`) or the [WHO](https://www.whocc.no/atc_ddd_index/?code=J01CA04&showdescription=no) (like `"J01CA04"`) to trivial names (like `"amoxicillin"`) and vice versa. + ## How to use it? ```r # Call it with: @@ -73,7 +75,7 @@ Other epidemiological functions: ```r # Apply EUCAST Expert Rules v3.1 (latest) to antibiotic columns -interpretive_reading(...) +EUCAST_rules(...) # Determine key antibiotic based on bacteria ID key_antibiotics(...) @@ -91,11 +93,6 @@ rsi_predict(...) # Get name of antibiotic by ATC code abname(...) abname("J01CR02", from = "atc", to = "umcg") # "AMCL" - -# Calculate age of patients -age(...) -# Categorize patients age to age groups -age.group(...) ``` ## How to get it?