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(v1.7.1.9007) Updated antibiotics dataset, fixes #41

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dr. M.S. (Matthijs) Berends
2021-06-23 10:03:17 +02:00
parent 1dc9d237f6
commit 95050ee3e0
34 changed files with 91 additions and 86 deletions
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inst/tinytest/test-data.R
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@ -29,8 +29,10 @@ expect_true(AMR:::check_dataset_integrity()) # in misc.R
expect_identical(nrow(microorganisms), length(unique(microorganisms$mo)))
expect_identical(class(microorganisms$mo), c("mo", "character"))
expect_identical(nrow(antibiotics), length(unique(antibiotics$ab)))
expect_true(all(is.na(antibiotics$atc[duplicated(antibiotics$atc)])))
expect_identical(class(antibiotics$ab), c("ab", "character"))
# check cross table reference
expect_true(all(microorganisms.codes$mo %in% microorganisms$mo))
expect_true(all(example_isolates$mo %in% microorganisms$mo))