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(v2.1.1.9133) (v2.1.1.9132) unit test, final fixes

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dr. M.S. (Matthijs) Berends
2025-01-27 22:06:32 +01:00
parent f03933940c
commit 9520977a10
14 changed files with 25 additions and 21 deletions
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7
_pkgdown.yml
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@ -173,9 +173,10 @@ reference:
desc: >
Use these function for the analysis part. You can use `susceptibility()` or `resistance()` on any antibiotic column.
With `antibiogram()`, you can generate a traditional, combined, syndromic, or weighted-incidence syndromic combination
antibiogram(WISCA). This function also comes with support for R Markdown and Quarto.
antibiogram (WISCA). This function also comes with support for R Markdown and Quarto.
Be sure to first select the isolates that are appropiate for analysis, by using `first_isolate()` or `is_new_episode()`.
You can also filter your data on certain resistance in certain antibiotic classes (`carbapenems()`, `aminoglycosides()`), or determine multi-drug resistant microorganisms (MDRO, `mdro()`).
You can also filter your data on certain resistance in certain antibiotic classes (`carbapenems()`, `aminoglycosides()`),
or determine multi-drug resistant microorganisms (MDRO, `mdro()`).
contents:
- "`antibiogram`"
- "`proportion`"
@ -184,9 +185,9 @@ reference:
- "`first_isolate`"
- "`key_antimicrobials`"
- "`mdro`"
- "`count`"
- "`bug_drug_combinations`"
- "`antimicrobial_class_selectors`"
- "`top_n_microorganisms`"
- "`mean_amr_distance`"
- "`resistance_predict`"
- "`guess_ab_col`"